View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857-Insertion-9 (Length: 526)
Name: NF4857-Insertion-9
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 4215516 - 4215803
Alignment:
| Q |
8 |
ataaattggattcatatgaagccaatttcattccatgctaaacaaactcaataaagaaaaataaaaatactcattcatacactatggcaaaaatcactgc |
107 |
Q |
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| T |
4215516 |
ataaattggattcatatgaagccaatttcattccatgctaaacaaactcaataaagaaaaataaaaatactcattcatacactatggcaaaaatcactgc |
4215615 |
T |
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| Q |
108 |
ttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtgcaggaacaagaaatcaaccaaagaaagacgatgatatttac |
207 |
Q |
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| T |
4215616 |
ttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttac |
4215715 |
T |
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| Q |
208 |
aaatctgaaaaaacgttcggttgtttgtttttgtataagttgtgtttgttctttcaaatagattgtcctgattactataagttatgtt |
295 |
Q |
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| T |
4215716 |
aaatctgaaaaaacgttcggttgtttgtttttgtataagatgtgtttgttctttcaaatagattgtcctgattactataagttatgtt |
4215803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 406 - 526
Target Start/End: Original strand, 4215953 - 4216073
Alignment:
| Q |
406 |
ggtaatcccccagctgaaggtggtgataggccaacagctcaaatccttccatgattgaagattgtggccatgcatgcatagtttgtgtaccattgatatc |
505 |
Q |
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| T |
4215953 |
ggtaatcccccagctgaaggtggtgatagtccaacagctcaaatccttccatgattgaagattgtggccatgcatgcatagtttgtgtaccattgatatc |
4216052 |
T |
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| Q |
506 |
tttacatttatatatgtatta |
526 |
Q |
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| T |
4216053 |
tatacatttatatatgtatta |
4216073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 4218139 - 4218217
Alignment:
| Q |
87 |
cactatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggt |
165 |
Q |
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| T |
4218139 |
cactatggcaaaaaccattgcttcaattgttttagttctccttgttgttgcaattttgaatggctatagtgctgagggt |
4218217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 34357100 - 34357185
Alignment:
| Q |
87 |
cactatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtgcaggaa |
172 |
Q |
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| T |
34357100 |
cactatggcaaaaaccattgcttcacttgttctagttttcctagttgttgcaatgctgaatggctatggtgctgagggtgcaggaa |
34357185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 5398525 - 5398630
Alignment:
| Q |
71 |
aaaatactcattcatac----actatggcaaaaatcactgcttcatttgttttggctctctttgttgttgcaattttgaatggttattgtgctgagggtg |
166 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||| |||||| || ||||||||||| ||| |||||||||||| |
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| T |
5398525 |
aaaatactcattcatacttacactatggcaaaatccactgcttcacttgttttggttctccttgttgcggcgattttgaatggctatagtgctgagggtg |
5398624 |
T |
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| Q |
167 |
caggaa |
172 |
Q |
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|||||| |
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| T |
5398625 |
caggaa |
5398630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 54726832 - 54726901
Alignment:
| Q |
65 |
aaaataaaaatactcattcatacactatggcaaaaatcactgcttcatttgttttggctctctttgttgt |
134 |
Q |
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| T |
54726832 |
aaaataaaaatactgattcttatattatggcaaaaaccactgcttcatttgttctagttgtctttgttgt |
54726901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 41804391 - 41804466
Alignment:
| Q |
143 |
tgaatggttattgtgctgagggtgcaggaacaagaaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
218 |
Q |
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||||||||||| |||||||| || ||||| | | |||| |||||||||||| |||| ||||||||||||| |||| |
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| T |
41804391 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
41804466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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