View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857_high_5 (Length: 339)
Name: NF4857_high_5
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 37546753 - 37546879
Alignment:
| Q |
202 |
gtaacatatgtatttaaggtgccaaagatgaaaaatactatgtattggagtaattactatttataaaatccttgtgttctaaataaaaacatgtgattac |
301 |
Q |
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| T |
37546753 |
gtaacatatgtatttaaggtgccaaagatgaaaaatactatgtattggagtaattactatttataaaatccttgtgttctaaataaaaacatgtgattac |
37546852 |
T |
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| Q |
302 |
caagaaaagatttggtctggtgagtat |
328 |
Q |
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| T |
37546853 |
caagaaaatatttgatctggtgagtat |
37546879 |
T |
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Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 37546577 - 37546674
Alignment:
| Q |
20 |
ttcagggtgtctcaaagtagactatgaatgtctaaagatcaattttcgttcagtattttctcatgaattactctaggagtccattaagctcactctaa |
117 |
Q |
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| T |
37546577 |
ttcagggtgtctgaaagtagactatgaatgtctaaagatcaattttcgttcagtattttctcatgaattactctaggagtccattaaactcacactaa |
37546674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 37546705 - 37546742
Alignment:
| Q |
115 |
taatgcctccgttgctaatgcttttattgtattcttgg |
152 |
Q |
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| T |
37546705 |
taatgcctccgttgctaatgcttttattgtattcttgg |
37546742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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