View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857_low_12 (Length: 239)
Name: NF4857_low_12
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 33880606 - 33880795
Alignment:
| Q |
1 |
ataagttttagaagagactaaggatgtgctgtttattttatannnnnnnaatttatcgagtttgagtaatttgaagataagtggagaggtaaataaagtc |
100 |
Q |
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| T |
33880606 |
ataagttttagaagagactaaggatgtgctgtttattttttattttttttatttatcgagtttgagtaatttgaagataagtggagaggtaaataaagtc |
33880705 |
T |
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| Q |
101 |
aagttaatatatggaagaacttaggtactacccatta--------atctaactaaccacttgattcatagcacatggttcatatgcagtt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33880706 |
aagttaatatatggaagaacttaggtactacccattaatccaagtatctaactaaccacttgattcatagcacatggttcataggcagtt |
33880795 |
T |
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