View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4857_low_13 (Length: 237)
Name: NF4857_low_13
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14397887 - 14398107
Alignment:
| Q |
1 |
tgcactgggtttgagtatgatgtcctattatgtagaatttttcttgataaggaagaattcttgttttggaagagaagcagaagcaaaactatgcatctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14397887 |
tgcactgggtttgagtatgatgtcctattatgtagaatttttcttgataaggaagaattcttgttttggaagagaagcagaagcaaaactatgcatttga |
14397986 |
T |
|
| Q |
101 |
agggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggttccgcaaaatgagtaagtattcgagtgtttatattgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
14397987 |
agggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggttctgcaaattgagtaagtattcgagtgtttatattgc |
14398086 |
T |
|
| Q |
201 |
ttaatgtttttactgtgtgat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14398087 |
ttaatgtttttactgtgtgat |
14398107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 14391742 - 14391868
Alignment:
| Q |
46 |
gataaggaagaa-ttcttgttttggaagagaagcagaagcaaaactatgcatctgaagggttcatggcgccatgaacaagaaaagttttcaaacatttgt |
144 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||| ||| |||||||||||||||||| |||| ||||||||||||||| ||||| || ||||||| || |
|
|
| T |
14391742 |
gataaggaaaaacttcttgttttggatgagaagcaaaagaaaaactatgcatctgaagagttcgtggcgccatgaacaatgaaagtcttaaaacattcgt |
14391841 |
T |
|
| Q |
145 |
tcaatcagagtagcaaggttccgcaaa |
171 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
14391842 |
tcagctagagtagcaaggttccgcaaa |
14391868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 16021816 - 16021700
Alignment:
| Q |
52 |
gaagaattcttgttttggaagagaagcagaagcaaaactatgcatctgaagggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatca |
151 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||| ||| | ||||||||||| ||||||| | |||||||| |||| |||||||||| |||||| || |
|
|
| T |
16021816 |
gaagacttcttgtttcggactagaagcagaagaaaagcattgcatctgaagagttcatg---ctatgaacaacgaaagccttcaaacattcgttcaagca |
16021720 |
T |
|
| Q |
152 |
gagtagcaaggttccgcaaa |
171 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16021719 |
gagtagcaaggttccgcaaa |
16021700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 14395709 - 14395762
Alignment:
| Q |
116 |
atgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggttccgca |
169 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
14395709 |
atgaccaagaaaagttttcaaacattcgttcaataagagtaccaaggttccgca |
14395762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 14391919 - 14391950
Alignment:
| Q |
186 |
gagtgtttatattgcttaatgtttttactgtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14391919 |
gagtgtttatattgcttaatgtttttactgtg |
14391950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 13883504 - 13883459
Alignment:
| Q |
176 |
gtaagtattcgag--tgtttatattgcttaatgtttttactgtgtg |
219 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
13883504 |
gtaagtattcgagattgtttatattgctaaatgtttttactgtgtg |
13883459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 13856681 - 13856581
Alignment:
| Q |
60 |
cttgttttggaagagaagcagaagcaaaactatgcatctgaagggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatcagagtagca |
159 |
Q |
| |
|
||||||| ||| ||||||||||| ||| | |||||||||| ||||||| |||||||||| |||||| || || || | ||||||||||||||||| |
|
|
| T |
13856681 |
cttgtttcggataagaagcagaagaaaagatttgcatctgaaatgttcatg---ccatgaacaataaaagtcttaaatcactcgttcaatcagagtagca |
13856585 |
T |
|
| Q |
160 |
aggt |
163 |
Q |
| |
|
|||| |
|
|
| T |
13856584 |
aggt |
13856581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 48707901 - 48707939
Alignment:
| Q |
126 |
aaagttttcaaacatttgttcaatcagagtagcaaggtt |
164 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
48707901 |
aaagtcttcaaacattcgttcaatcagagtagcaaggtt |
48707939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University