View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857_low_2 (Length: 480)
Name: NF4857_low_2
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 29660938 - 29660478
Alignment:
| Q |
16 |
aatatcaagggcatattttctctgattggggtgaatactttaatggaacgatccacgtccattctaagtatgcattttagggagctgaaatccttaattt |
115 |
Q |
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| T |
29660938 |
aatatcaagggcatattctctctgattggggtgaatactttaatggaacgatccacgtccaatctaagtatgcattttagggagctcaaatacttaattt |
29660839 |
T |
|
| Q |
116 |
tgaaggtcgaaacaagtacctgcttgacagagttaatctctgataaactagggtcaccgagtataacatcttccacatacaaattattaagattcggaaa |
215 |
Q |
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| T |
29660838 |
tgaaggtcgaaacaagtacctgcttgacagagttaatctctgataaactagggtcactgagtataacatcttccacatacaaattattaagattcggaaa |
29660739 |
T |
|
| Q |
216 |
accttgaactcataacacttctaatgaaggaagtagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttacagaaag |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660738 |
accttgaactcataacacttctaatgaaggaaatagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttacagaaag |
29660639 |
T |
|
| Q |
316 |
aataaacaggcaagtgaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattag--aaatccaagaagag-nnnnn |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29660638 |
aataaacaggcaagtgaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattagaaaaatccaagaagagaaaaaa |
29660539 |
T |
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| Q |
413 |
nnnngtataaactaattctgtttatatacaataaacagacacctttgtcgtttattctgtg |
473 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29660538 |
aaaagtataaactaattctgtttatatacaataagcagacacctttgtcgtttattctgtg |
29660478 |
T |
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