View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857_low_3 (Length: 478)
Name: NF4857_low_3
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 36569389 - 36569612
Alignment:
| Q |
9 |
agcagagatgtgggataatagtgggaggacaaaaacaattgataaccaaagctctttatagttatagtggtaaaaggtacgtaagataagatggaagggg |
108 |
Q |
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| T |
36569389 |
agcagagatgtgggataatagtgggaggacaaaaacaattgataaccaaagctctttatagttatagtggtaaaaggtacgtaagataagagggaagggg |
36569488 |
T |
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| Q |
109 |
aaaaattgaaatgaattgnnnnnnnnnnggacaaaatatgaaaattaaggtttgcacgagcatgactatcatccatttacgaataatagatagatagata |
208 |
Q |
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| T |
36569489 |
aaaaattgaaatgaattg-aaaaaaaaaggacaaaatatgaaaattaaggtttgcacgagcatgactatcatccatttacgaata--------atagata |
36569579 |
T |
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| Q |
209 |
gattcacagcactaaaattcttagttcataatt |
241 |
Q |
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| T |
36569580 |
gattcacagcactaaaattcttagttcataatt |
36569612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 296 - 459
Target Start/End: Original strand, 36570073 - 36570236
Alignment:
| Q |
296 |
caatcgcccccataaatatcaaacaatttcaaccttattgcctatatcttctatccttccacctaaatttttccaacctgtcttggctacttcttgggat |
395 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36570073 |
caatcgcccccataaatatcaaacaatctcaaccttattgcctatatcttctatccttccacctaaatttttccaacctgtcttggctacttcttaggat |
36570172 |
T |
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| Q |
396 |
catctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaa |
459 |
Q |
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| T |
36570173 |
catctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaa |
36570236 |
T |
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