View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4857_low_4 (Length: 393)

Name: NF4857_low_4
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4857_low_4
NF4857_low_4
[»] chr5 (5 HSPs)
chr5 (236-374)||(24199421-24199557)
chr5 (310-352)||(2063698-2063740)
chr5 (310-344)||(29434154-29434188)
chr5 (310-347)||(95470-95507)
chr5 (303-340)||(27560666-27560703)
[»] chr2 (7 HSPs)
chr2 (302-364)||(11064444-11064506)
chr2 (302-346)||(5137306-5137350)
chr2 (307-347)||(13982515-13982555)
chr2 (310-347)||(2029847-2029884)
chr2 (310-347)||(14466379-14466416)
chr2 (310-347)||(16419345-16419382)
chr2 (303-343)||(3185961-3186001)
[»] chr4 (6 HSPs)
chr4 (302-348)||(49190147-49190193)
chr4 (310-352)||(6218282-6218324)
chr4 (306-348)||(11265936-11265978)
chr4 (302-352)||(16197721-16197771)
chr4 (304-361)||(27634271-27634328)
chr4 (306-346)||(22445526-22445566)
[»] chr3 (5 HSPs)
chr3 (306-359)||(35018549-35018602)
chr3 (305-347)||(48500668-48500710)
chr3 (307-347)||(35700077-35700117)
chr3 (310-346)||(45828097-45828133)
chr3 (310-346)||(54567970-54568006)
[»] chr6 (3 HSPs)
chr6 (303-347)||(19385611-19385655)
chr6 (310-347)||(13353279-13353316)
chr6 (310-347)||(33796404-33796441)
[»] chr1 (4 HSPs)
chr1 (305-361)||(4112730-4112786)
chr1 (310-346)||(4112976-4113012)
chr1 (303-333)||(39007191-39007221)
chr1 (302-340)||(41590502-41590540)
[»] scaffold0048 (1 HSPs)
scaffold0048 (310-348)||(81920-81958)
[»] chr8 (7 HSPs)
chr8 (310-352)||(36917403-36917445)
chr8 (310-347)||(8084205-8084242)
chr8 (310-347)||(11232163-11232200)
chr8 (310-347)||(11232398-11232435)
chr8 (130-195)||(38888751-38888815)
chr8 (306-347)||(42584744-42584785)
chr8 (310-346)||(10615472-10615508)
[»] scaffold0519 (1 HSPs)
scaffold0519 (310-347)||(1994-2031)
[»] scaffold0129 (1 HSPs)
scaffold0129 (310-347)||(14381-14418)
[»] chr7 (4 HSPs)
chr7 (310-347)||(1596671-1596708)
chr7 (310-347)||(21861372-21861409)
chr7 (310-347)||(25620214-25620251)
chr7 (310-347)||(33834269-33834306)
[»] scaffold0692 (1 HSPs)
scaffold0692 (310-346)||(5724-5760)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 236 - 374
Target Start/End: Original strand, 24199421 - 24199557
Alignment:
Q  236 ttcttggcccagatacgtagcctcctctgttgtttcctgtgtttcgctggactccccaacaaaattaacccaaattctaagatggtatcggagcctatcc 335  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24199421 ttcttcgcccagatacgtagcctcct--gttgtttcctgtgtttcgctggactccccaacaaaattaacccaaattctaagatggtatcggagcctatcc 24199518  T
Q  336 aagatccattggatcactcgctatcatgtctctcgttat 374  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24199519 aagatccattggatcactcgctatcatgtctctcgttat 24199557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 2063740 - 2063698
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattggatcac 352  Q
    ||||||||||||||| |||||| | ||||||||||||||||||    
T  2063740 ttctaagatggtatcagagcctcttcaagatccattggatcac 2063698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 29434154 - 29434188
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccat 344  Q
    ||||||||||||||| |||||||||||||||||||    
T  29434154 ttctaagatggtatcagagcctatccaagatccat 29434188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 95507 - 95470
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  95507 ttctaagatggtatcagagcctctccaagatccattgg 95470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 27560703 - 27560666
Alignment:
Q  303 acccaaattctaagatggtatcggagcctatccaagat 340  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  27560703 acccgaattctaagatggtatcagagcctatccaagat 27560666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 11064506 - 11064444
Alignment:
Q  302 aacccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatcatgt 364  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||| |||||    
T  11064506 aacccaaattctaatatggtatcggagcctatccaagagccattgtaccactcgctaccatgt 11064444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 5137306 - 5137350
Alignment:
Q  302 aacccaaattctaagatggtatcggagcctatccaagatccattg 346  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||    
T  5137306 aacccaaattctaagatggtattagagcttatccaagatccattg 5137350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 13982555 - 13982515
Alignment:
Q  307 aaattctaagatggtatcggagcctatccaagatccattgg 347  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  13982555 aaattcaaagatggtatcagagcctatccaagatccattgg 13982515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 2029847 - 2029884
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  2029847 ttctaagatggtatcagagcctctccaagatccattgg 2029884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 14466416 - 14466379
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  14466416 ttctaagatggtatcagagcctctccaagatccattgg 14466379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 16419345 - 16419382
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  16419345 ttctaagatggtatcagagcctctccaagatccattgg 16419382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 3185961 - 3186001
Alignment:
Q  303 acccaaattctaagatggtatcggagcctatccaagatcca 343  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  3185961 acccaaattttaagatggtatcagagcctatccaaaatcca 3186001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 49190193 - 49190147
Alignment:
Q  302 aacccaaattctaagatggtatcggagcctatccaagatccattgga 348  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  49190193 aacccaaattctaagatggtatcagagcctatccaagatccgttgga 49190147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 6218282 - 6218324
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattggatcac 352  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  6218282 ttctaagatggtatcagagcctctccaagatccattggatcac 6218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 11265936 - 11265978
Alignment:
Q  306 caaattctaagatggtatcggagcctatccaagatccattgga 348  Q
    |||||| |||||||||||| ||| |||||||||||||||||||    
T  11265936 caaattttaagatggtatctgagtctatccaagatccattgga 11265978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 16197771 - 16197721
Alignment:
Q  302 aacccaaattctaagatggtatcggagcctatccaagatccattggatcac 352  Q
    |||| |||||||||||||||||  | | |||||||||||||||||||||||    
T  16197771 aacctaaattctaagatggtattagtgtctatccaagatccattggatcac 16197721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 27634328 - 27634271
Alignment:
Q  304 cccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatca 361  Q
    ||||||||  || |||||||| |||||| |||||||||||||||| |||| |||||||    
T  27634328 cccaaattacaacatggtatcagagcctctccaagatccattggaccacttgctatca 27634271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 22445526 - 22445566
Alignment:
Q  306 caaattctaagatggtatcggagcctatccaagatccattg 346  Q
    ||||||||||||||||||| |||||| | ||||||||||||    
T  22445526 caaattctaagatggtatcagagcctcttcaagatccattg 22445566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 35018549 - 35018602
Alignment:
Q  306 caaattctaagatggtatcggagcctatccaagatccattggatcactcgctat 359  Q
    |||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||    
T  35018549 caaattctaagatgatatcagagcctatccaagatccgttgggtcacttgctat 35018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 48500668 - 48500710
Alignment:
Q  305 ccaaattctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||    
T  48500668 ccaaattgtaagatggtatgggagcctatccaagatacattgg 48500710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 35700117 - 35700077
Alignment:
Q  307 aaattctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||||||| || |||||| |||||||||||    
T  35700117 aaattctaagatggtatcgaagtctatccgagatccattgg 35700077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 45828097 - 45828133
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattg 346  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  45828097 ttctaagatggtatcagagcctctccaagatccattg 45828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 54567970 - 54568006
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattg 346  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  54567970 ttctaagatggtatcagagcctctccaagatccattg 54568006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 19385611 - 19385655
Alignment:
Q  303 acccaaattctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||    
T  19385611 acccaaattctaagatggtatcaaagcctatccaagatctattgg 19385655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 13353279 - 13353316
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  13353279 ttctaagatggtatcagagcctctccaagatccattgg 13353316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 33796404 - 33796441
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  33796404 ttctaagatggtatcagagcctctccaagatccattgg 33796441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 4112786 - 4112730
Alignment:
Q  305 ccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatca 361  Q
    |||| ||||||||||||||| |||||| |||||||||||||||| |||  |||||||    
T  4112786 ccaatttctaagatggtatcagagcctctccaagatccattggaccacctgctatca 4112730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 4113012 - 4112976
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattg 346  Q
    |||||||||||||||||||||| ||||||||||||||    
T  4113012 ttctaagatggtatcggagcctctccaagatccattg 4112976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Original strand, 39007191 - 39007221
Alignment:
Q  303 acccaaattctaagatggtatcggagcctat 333  Q
    |||||||||||||||||||||||||||||||    
T  39007191 acccaaattctaagatggtatcggagcctat 39007221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 41590540 - 41590502
Alignment:
Q  302 aacccaaattctaagatggtatcggagcctatccaagat 340  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  41590540 aacccaaattctaagatggtatcagagcctatcctagat 41590502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 81920 - 81958
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgga 348  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  81920 ttctaagatggtatcagagcctctccaagatccattgga 81958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 36917445 - 36917403
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattggatcac 352  Q
    ||||||||||||||| |||||| |||||||||||||| |||||    
T  36917445 ttctaagatggtatcagagcctctccaagatccattgaatcac 36917403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 8084205 - 8084242
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  8084205 ttctaagatggtatcagagcctctccaagatccattgg 8084242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 11232200 - 11232163
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  11232200 ttctaagatggtatcagagcctctccaagatccattgg 11232163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 11232435 - 11232398
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  11232435 ttctaagatggtatcagagcctctccaagatccattgg 11232398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 38888751 - 38888815
Alignment:
Q  130 tatttttatgaatcataagatacatgattgataaaaatgtcatttttaagtaaaaacaagtaacat 195  Q
    |||| ||||||||||| ||||||||||| || |||||||||| | ||||||||||| |||| ||||    
T  38888751 tattattatgaatcatgagatacatgatagaaaaaaatgtca-tattaagtaaaaataagtgacat 38888815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 42584744 - 42584785
Alignment:
Q  306 caaattctaagatggtatcggagcctatccaagatccattgg 347  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  42584744 caaattctaagacggtatcagagcctatccaagatccgttgg 42584785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 10615472 - 10615508
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattg 346  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  10615472 ttctaagatggtatcagagcctctccaagatccattg 10615508  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 1994 - 2031
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1994 ttctaagatggtatcagagcctctccaagatccattgg 2031  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 14381 - 14418
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  14381 ttctaagatggtatcagagcctctccaagatccattgg 14418  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 1596671 - 1596708
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1596671 ttctaagatggtatcagagcctctccaagatccattgg 1596708  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 21861372 - 21861409
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  21861372 ttctaagatggtatcagagcctctccaagatccattgg 21861409  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 25620214 - 25620251
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  25620214 ttctaagatggtatcagagcctctccaagatccattgg 25620251  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 33834269 - 33834306
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattgg 347  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  33834269 ttctaagatggtatcagagcctctccaagatccattgg 33834306  T

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Target: scaffold0692 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 5760 - 5724
Alignment:
Q  310 ttctaagatggtatcggagcctatccaagatccattg 346  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  5760 ttctaagatggtatcagagcctctccaagatccattg 5724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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