View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857_low_5 (Length: 361)
Name: NF4857_low_5
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 33880087 - 33879919
Alignment:
| Q |
190 |
taaacaaccttagttgaataatttagtgaaggtcaatgataatctctcggtataaagtctttgttttcattcaaaaccaaaaagtcaacctccattgcct |
289 |
Q |
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| T |
33880087 |
taaacaaacttagttcaataatttagtgaaagtcaatgataatctctcggtataaagtctttgttttcattcaaaaccaaaaagtcaacctccattgcct |
33879988 |
T |
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| Q |
290 |
cttgctatattgtaattgttttgacaatgtaaaagatgctaaatacaattcaaactattcatctcactc |
358 |
Q |
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| T |
33879987 |
cttgctatattgtaattgttttgacaatgtaaaagatgctaaatacaattcaaactattcatctcactc |
33879919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 33880504 - 33880375
Alignment:
| Q |
1 |
tattttttattttaaatatttcgacaactaaataatatcacttcacatttaagttcgaatgtatgtaactatga---acttcaaaagaaaaacatgtatt |
97 |
Q |
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| T |
33880504 |
tattttttattttaaatatttcaacaactaa----tatcacttcacatttaagttcgaatgtatgttaatatgatgaacttcaaaagaaaaacatgtatt |
33880409 |
T |
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| Q |
98 |
ttccacactaaaaaaacacacttaatgttttatac |
132 |
Q |
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| T |
33880408 |
ttccacactaa-aaaacacacttaatgttttatac |
33880375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 33875787 - 33875678
Alignment:
| Q |
216 |
tgaaggtcaatgataatctctcggtataaagtctttgttttcattcaaaaccaaaaagtcaacctccattgcctcttgctatattgtaattgttttgaca |
315 |
Q |
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| T |
33875787 |
tgaaagtcaataataatctctc---atgaattctttgtctccattctaaaccactaagtcaactttcattatctcttgctatcttgtaattgttttgaca |
33875691 |
T |
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| Q |
316 |
atgtaaaagatgc |
328 |
Q |
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| T |
33875690 |
atgtaaaagatgc |
33875678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 33880364 - 33880316
Alignment:
| Q |
147 |
aatgttaacccta---aattttctcataatttcatgttattttttgtaa |
192 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
33880364 |
aatgttaaccctacttaattttctcataatttcatgttatttttcgtaa |
33880316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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