View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4858-Insertion-1 (Length: 940)
Name: NF4858-Insertion-1
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4858-Insertion-1 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 242 - 723
Target Start/End: Original strand, 40948216 - 40948697
Alignment:
| Q |
242 |
atgaccttgagttctctaaagttcttgcaatgctttgtaatttcttcaaaaacatatcctgggtattcaatgcaaggcattgtcatggactctagatttg |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40948216 |
atgaccttgagttctctaaagttcttgcaatgctttgtaatttcttcaaaaacatatcctgggtattcagtgcaaggcattgtcatggactctagatttg |
40948315 |
T |
|
| Q |
342 |
tccacaccctaattgcccttacaattcctatcttctttatacggttccaagatacaaagactagtcgtcttacatgtgggcacctgccataatgtacaca |
441 |
Q |
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| T |
40948316 |
tccacaccctaattgcccttacaattcctatcttctttatacggttccaagatacaaagactagtcgtcttacatgtgggcacctgccataatgtacaca |
40948415 |
T |
|
| Q |
442 |
atacaatacaatacaataaaatcaccatctaattaaataatctaactagtagccacgagaaaacattagtactgtctaaacatatatttttatgaattta |
541 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40948416 |
atacaatacaatacaatacaatcaccatctaattaaataatctaactagtagccacgagaaaacattagtactgtctaaacatagatttttatgaattta |
40948515 |
T |
|
| Q |
542 |
agaattcttcttcttcaattgtgttttttcccgatagagaatatgtcttgaaatagttggattctaccttggatcgtatttataggtgatctataatgga |
641 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40948516 |
agaattcttcttcttcaattgggttttttcccgatagagaatatgtcttgaaatagttggattctaccttggatcgtatttataggtgatctacaatgga |
40948615 |
T |
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| Q |
642 |
ttatggtttttcatggttagatcaagtaagaatcgcagattttatcatggtcccttgtacatggttgaaagggtcacaattt |
723 |
Q |
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| T |
40948616 |
ttatggtttttcatggttagatcaagtaagaattgtagattttatcatcgtcccttgtacatagttgaaagggtcataattt |
40948697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 40948017 - 40948216
Alignment:
| Q |
7 |
acccttctcaatgattataggatcaataccactagaaaacatatatccttcatgaggatatggaagaggtaccacatgacaagaatgtgaaatgttgagc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40948017 |
acccttctcaatgattataggatcaataccactagaaaacatatatccttcatgaggatatggaagaggtaccacatgacaagaatgtgaaatgttgagc |
40948116 |
T |
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| Q |
107 |
acttctaagtcttttagctcatctaatattaaaatgagagcttctttcgacaaccctgaacatcgaagactcaacactttcaagtttggaagaaatgcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40948117 |
acttctaagtcttttagctcatctaatattaaaatgagagcttctttcgacaaccctgaacatcgaagactcaacactttcaagtttggaagaaatgcaa |
40948216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 776 - 920
Target Start/End: Original strand, 40948770 - 40948903
Alignment:
| Q |
776 |
ttaatttatttaaattggatcttattgatcattagatttgggttattgatactctcagataggaggatgatagagttggattgtttgtagacggcaccat |
875 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40948770 |
ttaatttatttaaattggatcttattgatcattagatttggttca-----------agataggaggatgatagagttggattgtttgtagacggcaccat |
40948858 |
T |
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| Q |
876 |
gataaatttgtaagtcatatttaatctaatggtaaaaataaatgg |
920 |
Q |
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| T |
40948859 |
gataaatttttaagtcatatttaatctaatggtaaaaataaatgg |
40948903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 40948706 - 40948739
Alignment:
| Q |
710 |
aagggtcacaatttgatcattctatttggtgtag |
743 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40948706 |
aagggtcacaatttgatcattctatttggtgtag |
40948739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 78 - 453
Target Start/End: Complemental strand, 45656427 - 45656052
Alignment:
| Q |
78 |
ccacatgacaagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagct-tctttcgacaaccctgaacatcgaagac |
176 |
Q |
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|||||||||||||||||||||||||||||||||| || | |||||||| || || ||||||||||||||| ||||| ||||| ||||||||||| |||| |
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| T |
45656427 |
ccacatgacaagaatgtgaaatgttgagcacttccaaatgttttagcttatttagaattaaaatgagagctctcttt-gacaatcctgaacatcgcagac |
45656329 |
T |
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| Q |
177 |
tcaacactttcaagtttggaagaaatgcaacgagtgaggcagcaaatttcatgtcaagacaccccatgaccttgagttctctaaagttcttgcaatgctt |
276 |
Q |
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|||| ||||| | |||||||||| || ||||| |||||||| ||| ||| || ||||| |||||||||||||||||||||||||||||||| |
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| T |
45656328 |
tcaatacttttaggtttggaagacatcttgtgagtgcataagcaaattgtatgccaatgcaacccataaccttgagttctctaaagttcttgcaatgctt |
45656229 |
T |
|
| Q |
277 |
tgtaatttcttcaaaaacatatcctgggtattcaatgcaaggcattgtcatggactctagatttgtccacaccctaattgcccttacaattcctatcttc |
376 |
Q |
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|| ||||||||||||||||||| || | | |||| ||||||||||| ||||| |||| | |||| | ||||||||| || |||||| || | |
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| T |
45656228 |
tgagatttcttcaaaaacatatcggggattatatatgcctggcattgtcatagactcaagatctttccagcctctaattgcctttcgaattcccattctt |
45656129 |
T |
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| Q |
377 |
tttatacggttccaagatacaaagactagtcgtcttacatgtgggcacctgccataatgtacacaatacaatacaat |
453 |
Q |
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||||| |||||||| |||||||||||||||||||||||| |||| ||||||||| || ||| |||||| ||| |||| |
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| T |
45656128 |
tttattcggttccacgatacaaagactagtcgtcttacaagtggacacctgccacaaggtatacaataaaatgcaat |
45656052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 38622 - 38736
Alignment:
| Q |
85 |
acaagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagcttctttcgacaaccctgaacatcgaagactcaacact |
184 |
Q |
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||||||||||||||| || ||||||||||| | || || |||||| ||||| ||||||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
38622 |
acaagaatgtgaaatatttagcacttctaaatattgtaatctatctaaaattaagatgagagcttctttcaccaaccctgaacatcgaatactcaatact |
38721 |
T |
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| Q |
185 |
ttcaagtttggaaga |
199 |
Q |
| |
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| |||||||||||| |
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| T |
38722 |
cttaagtttggaaga |
38736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 38776 - 38875
Alignment:
| Q |
239 |
cccatgaccttgagttctctaaagttcttgcaatgctttgtaatttcttcaaaaacatatcctgggtattcaatgcaaggcattgtcatggactctagat |
338 |
Q |
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||||| |||||||||||||| || ||||||||| | ||| |||||||| ||||| ||| ||| ||||| ||| |||||||||||| |||||||||| |
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| T |
38776 |
cccataaccttgagttctctgaatttcttgcaactccttgaaatttcttgaaaaatataatttggatattctatggtaggcattgtcattgactctagat |
38875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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