View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4858-Insertion-2 (Length: 724)
Name: NF4858-Insertion-2
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4858-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 329 - 724
Target Start/End: Complemental strand, 53088995 - 53088601
Alignment:
| Q |
329 |
gtgtgtcatatgtatctaactgcctctaataatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgc |
428 |
Q |
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| T |
53088995 |
gtgtgtcatatgtatctaactgcctctaataatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgc |
53088896 |
T |
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| Q |
429 |
atattgtggatgttccatgcattgtttaaaaaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaaccggcgg |
528 |
Q |
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| T |
53088895 |
atattgtggatgttccatgcattgtttaaaaaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaaccggcgg |
53088796 |
T |
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| Q |
529 |
atcaatgcatggaccaggctaataaatattttttaaacataaactagaaactgctgctagaagaatccaattgggggagaaggagatcgtagatgtaccc |
628 |
Q |
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| T |
53088795 |
atcaatacatggaccaggctaataaatattttttaaacataaactagaaactgctgctagcagaatccaact-ggggagaaggagatcgtagatgtaccc |
53088697 |
T |
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| Q |
629 |
cttaacaatacaaatgttttggtcgaataaaataaacatggaaaatcaaaatcacttatgagttaaaatcatttccattttatattctctaatttc |
724 |
Q |
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| T |
53088696 |
cttaacaatacaaatgttttgatcgaataaaataaacatggaaaatcaaaatcacttatgagttgaaatcatttccattttatattctctaatttc |
53088601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 53089335 - 53089052
Alignment:
| Q |
8 |
tgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaag |
107 |
Q |
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| T |
53089335 |
tgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaag |
53089236 |
T |
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| Q |
108 |
ttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttc |
207 |
Q |
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| T |
53089235 |
ttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaactagccaagaagttc |
53089136 |
T |
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| Q |
208 |
catg-----------------atgaattttagcgagtataagtatgctatatgcattacattaccagaataattacctaaccgg |
274 |
Q |
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| T |
53089135 |
catgatgagtgacgagtttgtatgaattttagcgagtataagtatgctatatgcatcacattaccagaataattacctaaccgg |
53089052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 14334044 - 14333752
Alignment:
| Q |
8 |
tgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggt--------- |
98 |
Q |
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| T |
14334044 |
tgatgaagaattaatgatggaatttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggt |
14333945 |
T |
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| Q |
99 |
gttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagcc |
198 |
Q |
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| T |
14333944 |
gttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaacc |
14333845 |
T |
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| Q |
199 |
aagaagttccatgat-----------------gaattttagcgagtataagtatgctatatgcattacattaccagaataattacctaaccgg |
274 |
Q |
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| T |
14333844 |
aagaagttccatgatgaatgatgagtttatatgaattttagcgagtataagtatgcttcatgcattacattaccagattaattacctaaccgg |
14333752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 337 - 550
Target Start/End: Complemental strand, 14333689 - 14333484
Alignment:
| Q |
337 |
tatgtatctaactgcctctaataatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgcatattgtg |
436 |
Q |
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| T |
14333689 |
tatgtatctaactgtcgctaataatattgtgtaaaatttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtg |
14333590 |
T |
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| Q |
437 |
gatgttccatgcattgtttaaaaaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaacc-ggcggatcaatg |
535 |
Q |
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| T |
14333589 |
gatgttccatgcattgtttaaagaactaaaccggactg---------tggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaag |
14333499 |
T |
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| Q |
536 |
catggaccaggctaa |
550 |
Q |
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| T |
14333498 |
caaggaccaggctaa |
14333484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 576 - 707
Target Start/End: Complemental strand, 14333483 - 14333357
Alignment:
| Q |
576 |
aaactgctgctagaagaatccaattgggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttggtcgaataaaataaacatggaaaatc |
675 |
Q |
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| T |
14333483 |
aaactgctgctagaagaatcgaac----ggagaacgcgatcatagatgtaccccttaacaatataaatgttttggtcgaataaaataaacat-gaaaatc |
14333389 |
T |
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| Q |
676 |
aaaatcacttatgagttaaaatcatttccatt |
707 |
Q |
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| T |
14333388 |
aaaatcacttgtgagttaaaatcatatccatt |
14333357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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