View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4858-Insertion-4 (Length: 960)

Name: NF4858-Insertion-4
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4858-Insertion-4
NF4858-Insertion-4
[»] chr1 (2 HSPs)
chr1 (607-930)||(50362452-50362772)
chr1 (446-504)||(40980423-40980481)
[»] chr3 (3 HSPs)
chr3 (206-515)||(9463100-9463404)
chr3 (10-120)||(9463818-9463928)
chr3 (446-504)||(5564173-5564231)
[»] chr4 (1 HSPs)
chr4 (8-117)||(10423961-10424070)
[»] chr7 (2 HSPs)
chr7 (8-84)||(11901067-11901143)
chr7 (446-504)||(7851862-7851920)
[»] chr2 (2 HSPs)
chr2 (446-504)||(26450884-26450942)
chr2 (203-253)||(26451138-26451188)
[»] chr8 (2 HSPs)
chr8 (458-504)||(22783186-22783232)
chr8 (673-797)||(11290873-11290998)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 607 - 930
Target Start/End: Complemental strand, 50362772 - 50362452
Alignment:
Q  607 ccattgctcttatgcattgcatgatctgcacttttttcattcctcattgagtcattctcgtgctacatttatgcataaaccagtatcctcaacaactaca 706  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||| | ||||||||| |    
T  50362772 ccattgctcttatgcattgcatgatctgcacttttttcattcgtcattgagtatatctcgtgctacatttatgcataaaccagtatacccaacaactaaa 50362673  T
Q  707 ttatcttccttcctacttcagtatttattttaacttcgacaaataagcaaaaacctccatacatgtttgccaaatgccttgcaaaaacagtcctgaaact 806  Q
    ||||||||||||||||||||||||   |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  50362672 ttatcttccttcctacttcagtat---ttttaacttcaacaaagaagcaaaaatctccatacatgtttgccaaatgccttgcaacaacagtcctgaaact 50362576  T
Q  807 ccaataattaacatatctttctctcgcaata-aaaacttcaaaaattgcattagtgaatctacgca-atatgacaatcatgagaatattattgtattagt 904  Q
    ||||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||| | || || |||||||||||||||| ||||||||| || |||    
T  50362575 ccaataattgacatatctttctctcgcaatataaacctccaaaaattgcattagtgaacccacacatatatgacaatcatgag-atattattgcatcagt 50362477  T
Q  905 agacttcctaaaactcatgaaattca 930  Q
    | || ||| |||| ||||||||||||    
T  50362476 aaacctcc-aaaaatcatgaaattca 50362452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 40980423 - 40980481
Alignment:
Q  446 tttagaagtcaatcaatgtccattcttagagctttttacctgcaaacttttatatgaac 504  Q
    ||||||||||| ||||||||||||  ||||||| |||| ||||||| ||||||||||||    
T  40980423 tttagaagtcagtcaatgtccatttctagagctctttaactgcaaatttttatatgaac 40980481  T

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Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 206 - 515
Target Start/End: Complemental strand, 9463404 - 9463100
Alignment:
Q  206 ctatacctgcccaaaaattaggatagtaacaacttcaaaatagttcaaaggnnnnnnnnnnnttaaagtttgtgataactgaaccaacacatctatgttt 305  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||     ||||| |||| ||    
T  9463404 ctatacctgcccaaaaattaggatagtaacaactccaaaatagttcaaag--aaaaaaaaaattaaagtttgtgataactga-----cacatgtatgctt 9463312  T
Q  306 gcaccttccccgcaaatgtaaatgaaaaggactacac-aatgacaaagcgaggaacagagagtaataagctttggaagagtgataagcttcctcaataac 404  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||| |||||||||| ||||| |||    
T  9463311 gcaccttacccgcaaatgtaaatgaaaaggactacaccaatgacaaagtgaggaacagagagtagtaagctttggtagattgataagcttactcaacaac 9463212  T
Q  405 atgataatttgaaactaaaataaattttc-ttcatcatattttttagaagtcaatcaatgtccattcttagagctttttacctgcaaacttttatatgaa 503  Q
    || ||||||||||||||||| |||||||| |||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  9463211 ataataatttgaaactaaaacaaattttccttcaacatattctttagaagtcaatcattgtccattctttgagctttttacctgcaaacttttatatgaa 9463112  T
Q  504 ctttaaccagca 515  Q
    ||||||||||||    
T  9463111 ctttaaccagca 9463100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 9463928 - 9463818
Alignment:
Q  10 tgacacaatatgaaagatcttttttactactctttctgtaaatgtaaaagatcttaatctcttactccaatttatcatcttctcaaaaccttaaattttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||    
T  9463928 tgacacaatatgaaagatcttttttactactctttctgtaaatgtaaaagatcttaatctctcacttcaatttgtcctcttctcaaaaccttaaattttt 9463829  T
Q  110 taatgtcttct 120  Q
    |||||||||||    
T  9463828 taatgtcttct 9463818  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 5564173 - 5564231
Alignment:
Q  446 tttagaagtcaatcaatgtccattcttagagctttttacctgcaaacttttatatgaac 504  Q
    ||||||||||| ||||||||||| | ||||||| |||| ||||||| ||||||||||||    
T  5564173 tttagaagtcagtcaatgtccatgcctagagctctttaactgcaaagttttatatgaac 5564231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 8e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 10423961 - 10424070
Alignment:
Q  8 agtgacacaatatgaaagatcttttttactactctttctgtaaatgtaaaagatcttaatctcttactccaatttatcatcttctcaaaaccttaaattt 107  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||| |||||    
T  10423961 agtgacacaatataaaagatcttttttactgctctttctgtaaatgtaaaggatcttaatctctaacttcaatttatcctcttctcaaaaccttcaattt 10424060  T
Q  108 tttaatgtct 117  Q
    | ||||||||    
T  10424061 tctaatgtct 10424070  T

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Target: chr7 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 11901143 - 11901067
Alignment:
Q  8 agtgacacaatatgaaagatcttttttactactctttctgtaaatgtaaaagatcttaatctcttactccaatttat 84  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||    
T  11901143 agtgacacaatatcaaagatcttttttactactctttttataaatgtaaaagattttaatctctcacttcaatttat 11901067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 7851920 - 7851862
Alignment:
Q  446 tttagaagtcaatcaatgtccattcttagagctttttacctgcaaacttttatatgaac 504  Q
    ||||||||||| ||||||||||||| || |||| |||| ||||||| ||||||||||||    
T  7851920 tttagaagtcagtcaatgtccattcctaaagctctttaactgcaaagttttatatgaac 7851862  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 26450942 - 26450884
Alignment:
Q  446 tttagaagtcaatcaatgtccattcttagagctttttacctgcaaacttttatatgaac 504  Q
    ||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  26450942 tttagaagtcagtcaatgtccattcctagagctctttaactgcaaacttttatatgaac 26450884  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 26451188 - 26451138
Alignment:
Q  203 taactatacctgcccaaaaattaggatagtaacaacttcaaaatagttcaa 253  Q
    |||||||||||||||| |||||| || |||||||| | |||||||||||||    
T  26451188 taactatacctgcccataaattatgaaagtaacaattccaaaatagttcaa 26451138  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 22783232 - 22783186
Alignment:
Q  458 tcaatgtccattcttagagctttttacctgcaaacttttatatgaac 504  Q
    ||||||||||||| || |||| ||||||||||| |||||||||||||    
T  22783232 tcaatgtccattcctaaagctctttacctgcaagcttttatatgaac 22783186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 797
Target Start/End: Original strand, 11290873 - 11290998
Alignment:
Q  673 atttatgcataaaccagtatcctcaacaac-tacattatcttccttcctacttcagtatttattttaacttcgacaaataagcaaaaacctccatacatg 771  Q
    |||| |||||||||||||||   || |||| || ||||||| |||||||| |||  |  |||||| |||  | |||||||||||||| ||| |||||| |    
T  11290873 atttgtgcataaaccagtatggccatcaacctaaattatctgccttcctatttctatccttatttcaaccgcaacaaataagcaaaagccttcatacaag 11290972  T
Q  772 tttgccaaatgccttgcaaaaacagt 797  Q
     | ||||||| |||||||||||||||    
T  11290973 ctagccaaataccttgcaaaaacagt 11290998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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