View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4858_high_1 (Length: 541)
Name: NF4858_high_1
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4858_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 13393822 - 13394278
Alignment:
| Q |
1 |
ccaaccaatactattgggataaactttcaatccggtcattgtcgcttcaattcgttaaatnnnnnnnctaacaattagtagttacataccaacaagaggg |
100 |
Q |
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| T |
13393822 |
ccaaccaatactattgggataaactttcaatccggtccatgtcgcttcaattcgttaaataaaaaaactaacaattagtagttacataccaccaagaggg |
13393921 |
T |
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| Q |
101 |
taaggatgtgcatgaaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatggatgaatacaaatggaaaagaaaagggaacta |
200 |
Q |
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| T |
13393922 |
taaggatgtgcatgaaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatggatgaatacaaatggaaaagaaaagggaacta |
13394021 |
T |
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| Q |
201 |
aatctgaatgtgtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatactta |
300 |
Q |
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| T |
13394022 |
aatctgaatgtgtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatactta |
13394121 |
T |
|
| Q |
301 |
catgttgatagcagtgagtaaatcatcaccttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttc |
400 |
Q |
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| T |
13394122 |
catgttgatagcagtgagtaaatcatcaccttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttc |
13394221 |
T |
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| Q |
401 |
attgcaacttggtaagacaaatatatattttagttcctttgttccttcatttattac |
457 |
Q |
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| T |
13394222 |
attgcaacttggtaagacaaatatatattttagttcctttgttccttcatttattac |
13394278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 115 - 426
Target Start/End: Original strand, 13397038 - 13397352
Alignment:
| Q |
115 |
aaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatggat---gaatacaaatggaaaagaaaagggaactaaatctgaatgt |
211 |
Q |
| |
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|||||||||||||||||||| |||||||||| | |||||| ||||||||||||||| ||||| | |||||||||| |||||| ||||| ||||||| |
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| T |
13397038 |
aaattttcatgaagtttaatataatttggtgatgatgatataataggtgacatggattatgaataaagatggaaaagataagggagataaatatgaatgt |
13397137 |
T |
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| Q |
212 |
gtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatacttacatgttgatag |
311 |
Q |
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| T |
13397138 |
gcttacaatggtaacggtaaagtacctttgctatgttctgcttgtgcctttgttggactagcaattgccttggttatggagcatatttacatgttgatag |
13397237 |
T |
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| Q |
312 |
cagtgagtaaatcatcaccttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttcattgcaacttg |
411 |
Q |
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| T |
13397238 |
cagtgagtaaatcaccaccttctttacttgattgggataatgattcttcttctgtcaagtccttaatatccttggctggttttttctacattacaacttg |
13397337 |
T |
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| Q |
412 |
gtaagacaaatatat |
426 |
Q |
| |
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|||||| ||| |||| |
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| T |
13397338 |
gtaagagaaacatat |
13397352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 13394304 - 13394355
Alignment:
| Q |
475 |
cgagtccattcgaacatgtcactaacactaacatgtagatattggtaacaat |
526 |
Q |
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| T |
13394304 |
cgagtccatctgaacatgtcactaacactaacatgtcgatattggtaacaat |
13394355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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