View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4858_low_1 (Length: 731)
Name: NF4858_low_1
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4858_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 360 - 722
Target Start/End: Complemental strand, 40430090 - 40429731
Alignment:
| Q |
360 |
taaccttgaggccaatgagagataatcctttgcttaagcatatcaacagtggcagcagaagaatacttaaacggtccaatatcagaaccattgtttaacc |
459 |
Q |
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| T |
40430090 |
taaccttgaggccaatgagagataatcctttgcttaagcatatcaacagtggcagcagaagaatacttaaacggtccaatatcagaaccattgtttaacc |
40429991 |
T |
|
| Q |
460 |
taaacctgatttcaaccgaatcctcttcagccatttttaactcactttgnnnnnnnnnnnnnnnnctctcccctactcaaaccctaataatccttgttgg |
559 |
Q |
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| T |
40429990 |
taaacctgatttcaaccgaatcctcttcagccatttttaactcactttgttttttttttttt---ctctcccctactcaaaccctaataatccttgttgg |
40429894 |
T |
|
| Q |
560 |
aaaatgattatataattttacagttcaatcacatatacgcgcaaaatcaaagatacgtagtttcctagaataatggttgatagtaataaatgataataat |
659 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40429893 |
aaaatgattatataattttacagttcaatcacatatacgcgcaaaatcaaagatacgtagtttcctagaataatggttgatagtaataaatgataataat |
40429794 |
T |
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| Q |
660 |
gaaaaagagatatagtataatccaatattaccttattggattcaatcacctgcatgatgatgt |
722 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
40429793 |
gaaaaagagatatagtataatccaatattaccttattggatttaatcacctgcacgatgatgt |
40429731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 40430294 - 40430172
Alignment:
| Q |
156 |
aaactctgactcttaatataattacatggtcaaactcttaccttcgacaaatatgtaaatccaactcattaaatcaaacaagcaacttctaaaactgtac |
255 |
Q |
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| T |
40430294 |
aaactctgactcttagtataattacatggtcaaactcttaccttcgacaaatatgtaaatccaactcattaaatcaaacaagcaacttctaaaactgtaa |
40430195 |
T |
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| Q |
256 |
agaaacacttctactaatattct |
278 |
Q |
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| T |
40430194 |
agaaacacttctactaatattct |
40430172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 361 - 487
Target Start/End: Complemental strand, 40424546 - 40424420
Alignment:
| Q |
361 |
aaccttgaggccaatgagagataatcctttgcttaagcatatcaacagtggcagcagaagaatacttaaacggtccaatatcagaaccattgtttaacct |
460 |
Q |
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|||||| |||||||| ||||| ||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| || |||||| |
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| T |
40424546 |
aacctttaggccaatcagagacaattctttgcttaagcatatcaacagtagcagcagatgaatacctaaacggtccaatatcagaaccatcgtataacct |
40424447 |
T |
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| Q |
461 |
aaacctgatttcaaccgaatcctcttc |
487 |
Q |
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|||| |||| |||||| |||| ||||| |
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| T |
40424446 |
aaacttgatatcaaccaaatcttcttc |
40424420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2910106 - 2909973
Alignment:
| Q |
1 |
ctatcaagaaactcgaaatgaacctactcaaaccccaacgatttatcaactgcctcaagttgaaaaaataagtatgaatttgcatctctgatgataatat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910106 |
ctatcaagaaactcgaaatgaatctactcaaaccccaacgatttatcaactgcctcaagttgaaaaaataagtatgaatttgcatctctgatgataatat |
2910007 |
T |
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| Q |
101 |
ttgaatatgttttctttatgtcattttgtgcttc |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2910006 |
ttgaatatgttttctttatgtcattttgtgcttc |
2909973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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