View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4858_low_3 (Length: 531)

Name: NF4858_low_3
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4858_low_3
NF4858_low_3
[»] chr4 (9 HSPs)
chr4 (329-524)||(36087874-36088070)
chr4 (424-458)||(313657-313691)
chr4 (424-458)||(1638517-1638551)
chr4 (424-458)||(22128345-22128379)
chr4 (424-458)||(34557253-34557287)
chr4 (424-457)||(6553875-6553908)
chr4 (424-457)||(32175770-32175803)
chr4 (424-457)||(46286262-46286295)
chr4 (426-458)||(18714972-18715004)
[»] chr6 (6 HSPs)
chr6 (424-457)||(9060163-9060196)
chr6 (424-458)||(12351619-12351653)
chr6 (424-458)||(33547618-33547652)
chr6 (424-457)||(5360482-5360515)
chr6 (424-457)||(9885316-9885349)
chr6 (426-458)||(28668172-28668204)
[»] chr1 (8 HSPs)
chr1 (424-457)||(9882073-9882106)
chr1 (424-457)||(46865316-46865349)
chr1 (424-458)||(12720881-12720915)
chr1 (424-458)||(16913610-16913644)
chr1 (424-458)||(41063269-41063303)
chr1 (425-458)||(6775959-6775992)
chr1 (424-457)||(17661123-17661156)
chr1 (426-458)||(38531205-38531237)
[»] scaffold0284 (1 HSPs)
scaffold0284 (424-458)||(1552-1586)
[»] chr8 (5 HSPs)
chr8 (424-458)||(2265411-2265445)
chr8 (424-458)||(9631474-9631508)
chr8 (424-458)||(26399040-26399074)
chr8 (424-458)||(41527733-41527767)
chr8 (424-457)||(19256283-19256316)
[»] chr7 (4 HSPs)
chr7 (424-458)||(1907427-1907461)
chr7 (424-458)||(11890180-11890214)
chr7 (427-457)||(38090336-38090366)
chr7 (424-458)||(48933208-48933242)
[»] chr5 (5 HSPs)
chr5 (424-454)||(10420285-10420315)
chr5 (424-458)||(16121872-16121906)
chr5 (424-458)||(20187974-20188008)
chr5 (424-458)||(23974609-23974643)
chr5 (424-457)||(13620160-13620193)
[»] chr3 (6 HSPs)
chr3 (424-458)||(17582334-17582368)
chr3 (424-458)||(20761983-20762017)
chr3 (424-458)||(21020133-21020167)
chr3 (424-458)||(28390041-28390075)
chr3 (424-458)||(46012761-46012795)
chr3 (424-457)||(5565791-5565824)
[»] chr2 (3 HSPs)
chr2 (424-454)||(13134653-13134683)
chr2 (424-457)||(8430365-8430398)
chr2 (424-457)||(22192248-22192281)
[»] scaffold0087 (1 HSPs)
scaffold0087 (424-457)||(37820-37853)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 329 - 524
Target Start/End: Complemental strand, 36088070 - 36087874
Alignment:
Q  329 tcagaaaataccattgccaaattgcagcaagtcttttactgtattattataagtctcgtagggattgattacgcagcgagatgaatcagtatgttttagt 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||  |||||| |||||||||||||||||||||    
T  36088070 tcagaaaataccattgccaaattgcagcaagtcttttactgtattattataagccacgtacggattgattgtgcagcgtgatgaatcagtatgttttagt 36087971  T
Q  429 gacggaaaaaataaaatccctcacaaattcagcaatcacgagacaggtggatcgttagccataaca-ggtagagaagtgatgatcaagttgatgatg 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||||||||    
T  36087970 gacggaaaaaataaaatccctcacaaattcagcaatcacgagacaggtggatcgttagccataaaagggaaaagaagtgatgatcaagttgatgatg 36087874  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 313691 - 313657
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||| ||||||    
T  313691 ttagtgacggaaaaaataaaatccctcataaattc 313657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 1638551 - 1638517
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||||| ||||    
T  1638551 ttagtgacggaaaaaataaaatccctcacatattc 1638517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 22128345 - 22128379
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  22128345 ttagtgacggaaaaaataaaatctctcacaaattc 22128379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 34557287 - 34557253
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||| ||||||||||    
T  34557287 ttagtgacggaaaaaataaaatccttcacaaattc 34557253  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 6553908 - 6553875
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||||||||| |||||    
T  6553908 ttagtgacggaaaaaataaaatccctcataaatt 6553875  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 32175770 - 32175803
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  32175770 ttagtgacggaaaaaataaaattcctcacaaatt 32175803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 46286262 - 46286295
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  46286262 ttagtgacggaaaaaataaaattcctcacaaatt 46286295  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 18715004 - 18714972
Alignment:
Q  426 agtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||| ||||||||||||    
T  18715004 agtgacggaaaaaataaaattcctcacaaattc 18714972  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 9060196 - 9060163
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||||||||||||||    
T  9060196 ttagtgacggaaaaaataaaatccctcacaaatt 9060163  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 12351619 - 12351653
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  12351619 ttagtgacggaaaaaataaaattcctcacaaattc 12351653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 33547652 - 33547618
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||| ||||||||||||||||||||||||||||||    
T  33547652 ttagggacggaaaaaataaaatccctcacaaattc 33547618  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 5360515 - 5360482
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  5360515 ttagtgacggaaaaaataaaattcctcacaaatt 5360482  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 9885349 - 9885316
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||| ||||||||||    
T  9885349 ttagtgacggaaaaaataaaatctctcacaaatt 9885316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 28668204 - 28668172
Alignment:
Q  426 agtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||| ||||||||||||    
T  28668204 agtgacggaaaaaataaaattcctcacaaattc 28668172  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 9882073 - 9882106
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||||||||||||||    
T  9882073 ttagtgacggaaaaaataaaatccctcacaaatt 9882106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 46865349 - 46865316
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||||||||||||||    
T  46865349 ttagtgacggaaaaaataaaatccctcacaaatt 46865316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 12720915 - 12720881
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  12720915 ttagtgacggaaaaaataaaattcctcacaaattc 12720881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 16913610 - 16913644
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  16913610 ttagtgacggaaaaaataaaattcctcacaaattc 16913644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 41063303 - 41063269
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||||| ||||    
T  41063303 ttagtgacggaaaaaataaaatccctcacatattc 41063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 6775992 - 6775959
Alignment:
Q  425 tagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||| |||||||||||||||||||||||||||    
T  6775992 tagtgatggaaaaaataaaatccctcacaaattc 6775959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 17661156 - 17661123
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  17661156 ttagtgacggaaaaaataaaattcctcacaaatt 17661123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 38531205 - 38531237
Alignment:
Q  426 agtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||| ||||||||||||    
T  38531205 agtgacggaaaaaataaaattcctcacaaattc 38531237  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 1552 - 1586
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||| ||||||    
T  1552 ttagtgacggaaaaaataaaatccctcataaattc 1586  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 2265411 - 2265445
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||| ||||||||||    
T  2265411 ttagtgacggaaaaaataaaatccttcacaaattc 2265445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 9631508 - 9631474
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  9631508 ttagtgacggaaaaaataaaattcctcacaaattc 9631474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 26399040 - 26399074
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  26399040 ttagtgacggaaaaaataaaatctctcacaaattc 26399074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 41527733 - 41527767
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||| ||||||    
T  41527733 ttagtgacggaaaaaataaaatccctcataaattc 41527767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 19256316 - 19256283
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  19256316 ttagtgacggaaaaaataaaattcctcacaaatt 19256283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 1907461 - 1907427
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||||| ||||    
T  1907461 ttagtgacggaaaaaataaaatccctcacatattc 1907427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 11890180 - 11890214
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||||||||| ||||||    
T  11890180 ttagtgacggaaaaaataaaatccctcataaattc 11890214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 457
Target Start/End: Complemental strand, 38090366 - 38090336
Alignment:
Q  427 gtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||||||||||||    
T  38090366 gtgacggaaaaaataaaatccctcacaaatt 38090336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 48933242 - 48933208
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  48933242 ttagtgacggaaaaaataaaattcctcacaaattc 48933208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 454
Target Start/End: Original strand, 10420285 - 10420315
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaa 454  Q
    |||||||||||||||||||||||||||||||    
T  10420285 ttagtgacggaaaaaataaaatccctcacaa 10420315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 16121872 - 16121906
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  16121872 ttagtgacggaaaaaataaaattcctcacaaattc 16121906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 20187974 - 20188008
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  20187974 ttagtgacggaaaaaataaaattcctcacaaattc 20188008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 23974609 - 23974643
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  23974609 ttagtgacggaaaaaataaaatctctcacaaattc 23974643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 13620160 - 13620193
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||| ||||||||||    
T  13620160 ttagtgacggaaaaaataaaatctctcacaaatt 13620193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 17582334 - 17582368
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    |||||||||||||||||||||| ||||||||||||    
T  17582334 ttagtgacggaaaaaataaaattcctcacaaattc 17582368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 20761983 - 20762017
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  20761983 ttagtgacggaaaaaataaaatctctcacaaattc 20762017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 21020167 - 21020133
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  21020167 ttagtgacggaaaaaataaaatctctcacaaattc 21020133  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 28390075 - 28390041
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  28390075 ttagtgacggaaaaaataaaatctctcacaaattc 28390041  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 46012761 - 46012795
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaattc 458  Q
    ||||||||||||||||||||||| |||||||||||    
T  46012761 ttagtgacggaaaaaataaaatctctcacaaattc 46012795  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 5565824 - 5565791
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||| ||||||||||    
T  5565824 ttagtgacggaaaaaataaaatctctcacaaatt 5565791  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 454
Target Start/End: Original strand, 13134653 - 13134683
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaa 454  Q
    |||||||||||||||||||||||||||||||    
T  13134653 ttagtgacggaaaaaataaaatccctcacaa 13134683  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 8430398 - 8430365
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  8430398 ttagtgacggaaaaaataaaattcctcacaaatt 8430365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 22192281 - 22192248
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    ||||||||||||||||||||||| ||||||||||    
T  22192281 ttagtgacggaaaaaataaaatctctcacaaatt 22192248  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 37820 - 37853
Alignment:
Q  424 ttagtgacggaaaaaataaaatccctcacaaatt 457  Q
    |||||||||||||||||||||| |||||||||||    
T  37820 ttagtgacggaaaaaataaaattcctcacaaatt 37853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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