View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4858_low_4 (Length: 493)
Name: NF4858_low_4
Description: NF4858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4858_low_4 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 477
Target Start/End: Original strand, 40947562 - 40948022
Alignment:
| Q |
13 |
tgaagcaatgggaaaacctacttttgtgaagtcaacnnnnnnntcagcaaaatattatacacaaacataaaactacgtaaacatttcaacccaaactagc |
112 |
Q |
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| T |
40947562 |
tgaagcaatgggaaaacctacttgtgtgaagtcaacaaaaaaatcagcaaaatattatacacaaacataaaactacgtaaacatttcaacccaaactagc |
40947661 |
T |
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| Q |
113 |
tagggaagcattaatctactcttaaatatgaacataattnnnnnnnnnntgtcaattttgatatattgtgttttgaattcctaaagttagatgattaatt |
212 |
Q |
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| T |
40947662 |
tagggaagcattaatctactcttaaatatgaacataattaaaaaaaa--tgtcaattttcatacattgtgttttgaattcctaaagttagatgattaatt |
40947759 |
T |
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| Q |
213 |
tgagnnnnnnntaaataaatggtgaaatagaaactttgagttaaattagaagatctagggagtaatttagtaaaagagaaatataatggagtatgannnn |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40947760 |
tgagaaaaaa-taaataaatggtgaaatagaaactttgagttaaattagaagatctagggagtaatttagtaaaagagaaatataatagagtatg-gttt |
40947857 |
T |
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| Q |
313 |
nnnnatcttctgaaattaaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgctttt |
412 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40947858 |
ttttatcttctcaaattaaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagtccatcatctgctttt |
40947957 |
T |
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| Q |
413 |
gtcctctgacacatgatgcatgattcttccatgcatgtgtagaagtcacgcagcctggaaccctt |
477 |
Q |
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| T |
40947958 |
gtcctctgacacatgatgcatgattcttccatgcatgtgtagaagtcaagcagcctggaaccctt |
40948022 |
T |
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Target: scaffold0013 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 38401 - 38521
Alignment:
| Q |
332 |
agtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgcttttgtcctctgacacatgatgc |
431 |
Q |
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||||||||||| || | |||||||| |||||||||||| ||||| || || ||||| |||||||||||| ||| || |||| | ||||||||||||| |
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| T |
38401 |
agtgcaagagagctaacttcatcatgtttccaaatcccttcctcatacctaaaccacctaggaagcccacaatcaactcttgttcgatgacacatgatgc |
38500 |
T |
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| Q |
432 |
atgattcttccatgcatgtgt |
452 |
Q |
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| T |
38501 |
atgattctttcatgcatgtgt |
38521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 452
Target Start/End: Complemental strand, 45656649 - 45656527
Alignment:
| Q |
330 |
aaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgcttttgtcctctgacacatgat |
429 |
Q |
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| T |
45656649 |
aaagtgcaagagagctaacttcatcatgtttccaaatcccttcctcatacttgaaccacctaacaagcccatcatcatctcttgtcctcttacacatgat |
45656550 |
T |
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| Q |
430 |
gcatgattcttccatgcatgtgt |
452 |
Q |
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||| ||||| | |||||||||| |
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| T |
45656549 |
gcacgattccttgatgcatgtgt |
45656527 |
T |
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Back To:
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