View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859-Insertion-2 (Length: 837)
Name: NF4859-Insertion-2
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 34990141 - 34990532
Alignment:
| Q |
11 |
atttcagataactcctttatctctacaatgtcccgctgacaaagatggtcgttcatgttgcaataaggcagcatgttcagtttcaatgacgtctgattac |
110 |
Q |
| |
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| T |
34990141 |
atttcagataacttctttatctctacaatgttccgctgacaaagatggtcattcatgtcgcaataaggcagcatgttcagtttcaatgacgtctgattac |
34990240 |
T |
|
| Q |
111 |
ggaactcacaactggactggtgtgaatttcattgcagcgaaaggccgtattgaagtaagaaaaccatgtttacaatctttacattaatttctttaatatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34990241 |
ggaactcacaactggactggtgtgaatttcattgcagcgaaaggccgtattgaagtaagaaaaccatgttaacaatctttacattaatttctttaatatt |
34990340 |
T |
|
| Q |
211 |
gactgaaatttgtgactggcttatatttcaaaatggtagaacttacataaatatcacttcggtaatgaataaagtgtgagaaagagtgttagaaaatgtg |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
34990341 |
gactgaaatttgtgacaggcttatatttcaaaatggtagaacttacataaatatcacttcggtaataaataaagtgtgagaaagagtgttagagaatgtg |
34990440 |
T |
|
| Q |
311 |
tcgcagatattttgttttatgaaaagtgagtatctttgaattaacaatctttatctattggttaattagattactgcagaactggagaaaga |
402 |
Q |
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| T |
34990441 |
tcgcagatattttgttttatgaaaagtgagtatctttgaattaacaatctttatctattggttaattagattactgcagaactggagaaaga |
34990532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 448 - 722
Target Start/End: Original strand, 34990548 - 34990822
Alignment:
| Q |
448 |
atcttctgctgttgctgctactgcacaacctggtaattcagattccagaaaggccaatgaagaattagaagcttttacaacaaatgtgccggatgcagat |
547 |
Q |
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| T |
34990548 |
atcttctgctgttgctgctactgcacaacctggtaattcagattccagaaaggccaatgaagaattagaagcttttacaacaaatgtgccggatgcagat |
34990647 |
T |
|
| Q |
548 |
ggaaacataaatcccacatcaacaactggtgcagcaaatgatcaggataaaaagtctccttctgaagaggacatttaaagtcctattcgcgattagtttt |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34990648 |
ggaaacataaatcccacatcaacaactggtgcagcaaatgatcaggataaaaagtctccttctgaagaggacatttaaagtcctattcgcgattagtttt |
34990747 |
T |
|
| Q |
648 |
ggtgtcgagactgtgcaaagattcaggaaattattccaaaagacattattgttttcttttcatttgttttagttg |
722 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34990748 |
ggtgtcgagactgtgcaaagattcaggaaattattccaaaagatattattgttttcttttcatttgttttagttg |
34990822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 460 - 722
Target Start/End: Complemental strand, 35544964 - 35544701
Alignment:
| Q |
460 |
tgctgctactgcacaacctggtaattcagattccagaaaggccaatgaagaattagaagcttttacaacaaatgtgccggatgcagatggaaacataaat |
559 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| | |||| ||||||||||||||||||| |
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| T |
35544964 |
tgctgctgctgctcaagatggtaattcagattccataaaggccatcaaagaattagaagcttttccaacaaattt-ccggctgcagatggaaacataaat |
35544866 |
T |
|
| Q |
560 |
cccacatcaacaac---tggtgcagcaaatgatcaggataaaaagtctccttctgaagaggacatttaaagtcctattcgcgattagttttggtgtcgag |
656 |
Q |
| |
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|||||| ||||||| | |||| |||||||||||||| |||||||||||| ||||||||||||||| ||| || | ||||||||||||||||||||| |
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| T |
35544865 |
cccacaacaacaacaactcgtgctgcaaatgatcaggacaaaaagtctcctaatgaagaggacatttagagtactgct-gcgattagttttggtgtcgag |
35544767 |
T |
|
| Q |
657 |
actgtgcaaagattcaggaaattattccaaaagacattattgttttcttttcatttgttttagttg |
722 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
35544766 |
gctgtgcaaagattcaggaaatgattccaaaagacaccattgttttcttttctgttgttttagttg |
35544701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 723 - 837
Target Start/End: Original strand, 34990911 - 34991026
Alignment:
| Q |
723 |
aactttcaggtt-ctcttgttgaggaaagtggactaaaaatgatcatattgtcaatgaaaattttgtgtctttaatggttattctactctagtataaagt |
821 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34990911 |
aactttcaggtttctcttgttgaggaaagtggactaaaaatgatcatattgtcaatgaaaattttgtatctttaatggttattctactctagtataaagt |
34991010 |
T |
|
| Q |
822 |
gaacagattctttaga |
837 |
Q |
| |
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|||||||||| ||||| |
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| T |
34991011 |
gaacagattccttaga |
34991026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 230 - 402
Target Start/End: Complemental strand, 35545154 - 35544986
Alignment:
| Q |
230 |
cttatatttcaaaatggtagaacttacataaatatcacttcggtaatgaataaagtgtgagaaagagtgttagaaaatgtgtcgcagatattttgtttta |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | | ||| |||||| | ||||||||||||| | ||||||| ||| |||||||| |
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| T |
35545154 |
cttatatttcaaaatggtagaacttacataaatttcacttcgacagtaaatgaagtgttaaaaagagtgttagaca---tgtcgcacataatttgttttg |
35545058 |
T |
|
| Q |
330 |
tgaaaagtgagtatctttgaattaacaatctttatctattggttaattagattactgcagaactggagaaaga |
402 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||| |
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| T |
35545057 |
tgaaaagtgag-atctttgaattaacaatctttagctattggttaattagattaccgcagaacttgaggaaga |
35544986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 478 - 668
Target Start/End: Complemental strand, 35553707 - 35553520
Alignment:
| Q |
478 |
tggtaattcagattccagaaaggccaatgaagaattagaagcttttacaacaaatgtgccggatgcagatggaaacataaatcccacatcaacaactggt |
577 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| |||| |||| |||||| | ||| |||| ||||||||||||||| | |||||||| || |
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| T |
35553707 |
tggtaattcagattccaaaaaggccattgaagaataagaatctttgccaacaacttctccgactgcaaatggaaacataaatc---ctgcaacaactagt |
35553611 |
T |
|
| Q |
578 |
gcagcaaatgatcaggataaaaagtctccttctgaagaggacatttaaagtcctattcgcgattagttttggtgtcgagactgtgcaaaga |
668 |
Q |
| |
|
||| |||| |||||||| |||||||||||||| ||| ||||||||| |||||||||||| |||||||||| ||| ||| |||| |||||| |
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|
| T |
35553610 |
gcaacaaaagatcaggaaaaaaagtctccttccgaataggacatttggagtcctattcgctattagttttgttgtagaggctgttcaaaga |
35553520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 35527837 - 35527776
Alignment:
| Q |
341 |
tatctttgaattaacaatctttatctattggttaattagattactgcagaactggagaaaga |
402 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
35527837 |
tatctttgaattaacaatctttatgtattggttaattagattattgcagaactggagaaaga |
35527776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 545 - 656
Target Start/End: Complemental strand, 35527723 - 35527602
Alignment:
| Q |
545 |
gatggaaacataaatcccacatcaacaac---tggtgcagcaaatgatcaggataaaaagtctccttctgaagaggacatttaaagtccta-------tt |
634 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| |||||||||||||| ||| ||||||||||||||||||| || || ||||||| || |
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|
| T |
35527723 |
gatggaaacttaaatcccacaacaacaacaactggtgctgcaaatgatcaggacaaatagtctccttctgaagaggatatctagagtcctattcggcatt |
35527624 |
T |
|
| Q |
635 |
cgcgattagttttggtgtcgag |
656 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
35527623 |
cgcgattagttttggtgtcgag |
35527602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 34990445 - 34990496
Alignment:
| Q |
400 |
agatattttgttttatgaaaagtgagtatctctgaattaacaatctttatct |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34990445 |
agatattttgttttatgaaaagtgagtatctttgaattaacaatctttatct |
34990496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 594
Target Start/End: Original strand, 35925589 - 35925647
Alignment:
| Q |
536 |
ccggatgcagatggaaacataaatcccacatcaacaactggtgcagcaaatgatcagga |
594 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| || || |||||||||||| |
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|
| T |
35925589 |
ccggctgcagatggaaacataaatcccacaacaacaactagtacattaaatgatcagga |
35925647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 35528118 - 35528035
Alignment:
| Q |
10 |
tatttcagataactcctttatctctacaatgtcccgctgacaaagatggtcgttcatgttgcaataaggcagcatgttcagttt |
93 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||| ||||||||| | |||| ||||||||| ||||||| |||| |
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| T |
35528118 |
tatttgagataacttctttatctctacaatgtctcgctgatgaagatggtcatcaatgtcaaaataaggcaacatgttccgttt |
35528035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 389
Target Start/End: Complemental strand, 35553798 - 35553769
Alignment:
| Q |
360 |
tttatctattggttaattagattactgcag |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
35553798 |
tttatctattggttaattagattactgcag |
35553769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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