View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859-Insertion-4 (Length: 601)
Name: NF4859-Insertion-4
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 43267996 - 43267481
Alignment:
| Q |
8 |
gaattttccaccaccatcagcttgttcaattgcattacacactttatcttgtgcttctcttatcatcttctcgaatcgagctcgaacggaagatgcggtg |
107 |
Q |
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| T |
43267996 |
gaattttccaccaccatcagcttgttcaattgcattacacactttatcttgtgcttctcttatcatcttctcgaatcgagctcgaacggaagatgcggtg |
43267897 |
T |
|
| Q |
108 |
gctccatcgttgtcgacgccgcggagaaatgtatcggggcgttctgattctggtgtttctttttctattgaaacggttgcttttgttataagtcgttgaa |
207 |
Q |
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| T |
43267896 |
gctccgtcgttgtcgacgccgcgaagaaatgtatcggggcgttctgattctggtgtttctttttcaattgaaacggttgcttttgttataagtcgttgaa |
43267797 |
T |
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| Q |
208 |
agtggtgagaagatgtggttttacgcgtttgtgtagtgagtgattttgggggtgtatgagaaatatgagagatttgagttgattttgaagatgtgaatgt |
307 |
Q |
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| T |
43267796 |
agtggtgagaagatgtggttttacgggtttgtgtagtgagtgattttgggggtgtatgagaaatatgagagatttgagttgattttgaagatgtgaatgt |
43267697 |
T |
|
| Q |
308 |
gaagaagggagtgatggagtaagaaggagctgatatagaaattgtacacggcattgtaacgagaaatggtgttcgtttacactgtcactgtc------ac |
401 |
Q |
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| T |
43267696 |
gaagaagggagtgatggagtaagaaggagctgatatagaaattgtacacggcattgtaaagagaaatggtgttcgtttacactgtcactgtcactgtaac |
43267597 |
T |
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| Q |
402 |
agagaaatgaagaaaggaagaagagaa-ag-----gggggtttcaaaatgaagattgcga---gttacagtgacgataacatattataactcgacgataa |
492 |
Q |
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| T |
43267596 |
agagaaatgaagaaaggaagaagagaagagaaagagggggtttgaaaatgaagattgcgagttgttacagtgacgataac-----ataactcgacgataa |
43267502 |
T |
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| Q |
493 |
ggtgttcctgatatacttttc |
513 |
Q |
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| T |
43267501 |
ggtgttcctgatatacttttc |
43267481 |
T |
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