View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4859-Insertion-5 (Length: 556)

Name: NF4859-Insertion-5
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4859-Insertion-5
NF4859-Insertion-5
[»] chr4 (2 HSPs)
chr4 (7-556)||(53865681-53866230)
chr4 (95-174)||(54161453-54161532)


Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 7 - 556
Target Start/End: Original strand, 53865681 - 53866230
Alignment:
Q  7 atatttcactttattttgttgttgttgctgtagtcctgaggactgttttaaagttggcgaacaactaagacgagctgatgcaattgttctcacatatgca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  53865681 atatttcactttattttgttgttgttgctgtagtcctgaggactgttttaaagttggtgaacaactaagacgagctgatgcaattgttctcacatataca 53865780  T
Q  107 tgtgatcggcaagagacacttgaaagactgagttcattttggctcccgcgtcttcgcgatttaggggttctgttctctcctcttttttccatctacactt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53865781 tgtgatcggcaagagacacttgaaagactgagttcattttggctcccgcgtcttcgcgatttaggggttctgttctctcctcttttttccatctacactt 53865880  T
Q  207 tgttactattgtacactgcatttgtattgagaaaatgtttgcatgatatagttatatacttatatggacttaatgaacaggtaaacgttccggttatagt 306  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53865881 tgttactattgtacactgcatttgcattgagaaaatgtttgcatgatatagttatatacttatatggacttaatgaacaggtaaacgttccggttatagt 53865980  T
Q  307 cgctgcctgcaagcttgacttacaacatgataatcaagaggagagcttagaagacgttgaaatcactattcgttgttcagcatatacaactataggggta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53865981 cgctgcctgcaagcttgacttacaacatgataatcaagaggagagcttagaagacgttgaaatcactattcgttgttcagcatatacaactatgggggta 53866080  T
Q  407 tatatatatccttcatattattacaatcaacaacttcattgttttcaaatattattattaaaaaagtatttcactttacttttcttattgaaggtcgctg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53866081 tatatatatccttcatattattacaatcaacaacttcattgttttcaaatattattattaaaaaagtatttcactttacttttcttattgaaggtcgctg 53866180  T
Q  507 atgttttcacctttgcacaatattctgtcaattgtcctttgggtccgtta 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53866181 atgttttcacctttgcacaatattctgtcaattgtcctttgggtccgtta 53866230  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 54161532 - 54161453
Alignment:
Q  95 ctcacatatgcatgtgatcggcaagagacacttgaaagactgagttcattttggctcccgcgtcttcgcgatttaggggt 174  Q
    ||||| |||||||||||||| ||||  ||||||||||| |||| | ||||||||||||| |||||||||||||| |||||    
T  54161532 ctcacctatgcatgtgatcgccaagccacacttgaaagtctgactgcattttggctccctcgtcttcgcgatttgggggt 54161453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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