View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859-Insertion-6 (Length: 360)
Name: NF4859-Insertion-6
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 40269455 - 40269789
Alignment:
| Q |
7 |
aaaggggacacaatactctgacaacaaagtgctacgaggagcaagttgatgcattatgcttcagaaaaattgtgccttgtggcactttgttgaagtagat |
106 |
Q |
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| T |
40269455 |
aaaggggacacaatactctgacaacaaagtgctacgaggagcaagttgatgcattatgcttcagaaaaattgtgccttgtggcactttgttgaagtagat |
40269554 |
T |
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| Q |
107 |
ttacttgcaatcactacccgtattggttgaaacgaatttttccaacaagtagtttttgttaatcctttnnnnnnngtagttttctttaatgacattaaag |
206 |
Q |
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| T |
40269555 |
ttacttgcaatcacaccccgtattggttgaaacgaatttttccaacaagtagtttttgttaatcctttaaaaaaagtagttttctttaatgacgttaaag |
40269654 |
T |
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| Q |
207 |
acttaaacaacatttactttgtcattttcaaaccaaatgtctaggttgcgtgcattgttttctgcagattgaggttgtcacaacccctctagggttgtga |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269655 |
acttcaacaacatttactttgtcattttcaaaccaaatgtctaggttgcgtgcattgttttctgcagattgaggttgtcacaacccctctagggttgtga |
40269754 |
T |
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| Q |
307 |
acggtgttcctcgcacaaacaaacatttactcaac |
341 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
40269755 |
acggtgttcgtcgcacaaacaaacatttactcaac |
40269789 |
T |
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