View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859_high_3 (Length: 353)
Name: NF4859_high_3
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 45550251 - 45549927
Alignment:
| Q |
11 |
cacagaaccaaaaatccagtcatctgttgtcgacattgaataccctcctgctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgt |
110 |
Q |
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| T |
45550251 |
cacagaaccaaaaatccagtcatctgttgtcgacattgaataccctcctgctgaggcatatactcttcccaattatcaaatcaaagacactgatccaagt |
45550152 |
T |
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| Q |
111 |
ggggaaggtgagtaagacaattcaacggaagtttccgannnnnnnagactcttcattatgtatcaatatatcagagtactattttaaatagactcattca |
210 |
Q |
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| T |
45550151 |
ggggaaggtgagtaagacaattcaacg-aagtttccgatttttttagactcttcattatgtatcaatatgtcagagtactattttaaatagactcattca |
45550053 |
T |
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| Q |
211 |
ttgttttggagttaagataaaatgtgaaatttactcttgttagcttcccatgaccctaacggattatttacatagagattaatacttcgatttgttggct |
310 |
Q |
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| T |
45550052 |
ttgttttggagttaagataaaatgtgaaatttactcttgttagcttcccatgaccctaacagattatttacatagagattaatactttgatttgttggct |
45549953 |
T |
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| Q |
311 |
tacagatgaaagaaaagagattaaac |
336 |
Q |
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| T |
45549952 |
tacagatgaaagaaaagacattaaac |
45549927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 45549680 - 45549548
Alignment:
| Q |
61 |
ctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaacggaagtttccgannnnnnnagact |
160 |
Q |
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| T |
45549680 |
ctgaggcatatactcttcccaattatcaaaccaaagacgctgattcaagtgggaaaggtgagtaggtcaattcaac-aaagtatcagatttatttagact |
45549582 |
T |
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| Q |
161 |
cttcattatgtatcaatatatcagagtactattt |
194 |
Q |
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| T |
45549581 |
cctcattatgtatcaatatatcagtgtactattt |
45549548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 45550909 - 45550837
Alignment:
| Q |
63 |
gaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaa |
135 |
Q |
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| T |
45550909 |
gaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtaggccaattcaa |
45550837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 45544344 - 45544297
Alignment:
| Q |
214 |
ttttggagttaagataaaatgtgaaatttactcttgttagcttcccatg |
262 |
Q |
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| T |
45544344 |
ttttggagttaagttaaa-tgtgagatttactcttgttagcttcccatg |
45544297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 45545685 - 45545621
Alignment:
| Q |
60 |
gctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagta |
124 |
Q |
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| T |
45545685 |
gctgaggcatatacttttcccacttaccaaaccaaagacactaatccaaatgaggaaggtgagta |
45545621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 45545080 - 45545035
Alignment:
| Q |
11 |
cacagaaccaaaaatccagtcatctgttgtcgacattgaataccct |
56 |
Q |
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| T |
45545080 |
cacagaaccaaaaatccagtcatatgttgctgacactgaataccct |
45545035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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