View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859_high_6 (Length: 275)
Name: NF4859_high_6
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 12053663 - 12053410
Alignment:
| Q |
4 |
actacttacataagatcactttttcaacttagcatattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatct |
103 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12053663 |
actacttgcataagatcactttttcaacttagcaaattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatct |
12053564 |
T |
|
| Q |
104 |
cataattaaactgaaacaaggttgaggaaaaaagtggcggagatataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12053563 |
cataattaaactgaaacaaggttgaggaaaaaagtggcggagatataaagaatagtaccatataaaagttgactcaatttttaactgtgtgagattgttt |
12053464 |
T |
|
| Q |
204 |
actttttcaatatgatttcataccttctgccttcaagcagcattacaaatttca |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12053463 |
actttttcaatatgatttcataccttctgccttcaagcagcattacatatttca |
12053410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 12074093 - 12073863
Alignment:
| Q |
4 |
actacttacataagatcactttttcaacttagcatattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatct |
103 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12074093 |
actacttatataagatcacttttccaacgtagcaaattctttataatcaacatcacattataagttacataagcattcttaaattgatatttagaaatac |
12073994 |
T |
|
| Q |
104 |
cataattaaactgaaacaaggttgaggaaaaaagtggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtt |
202 |
Q |
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||||||| ||||||||||| ||||| ||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12073993 |
cataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaatagtggtatataaaagttggctcaatttttaactgtgtgagattgtt |
12073894 |
T |
|
| Q |
203 |
tactttttcaatatgatttcataccttctgc |
233 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
12073893 |
cactttttcaatatgatttcataccttctgc |
12073863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 257
Target Start/End: Complemental strand, 12051099 - 12050882
Alignment:
| Q |
41 |
tctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatctcataattaaactgaaacaaggttgaggaaaaaagtgg |
140 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| |
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| T |
12051099 |
tctttataatcaacctcacattataagttacataagcattcttaaaatgatatttagaaatatcataattgaactgcaacaaagttgaggaaaaacgtgg |
12051000 |
T |
|
| Q |
141 |
cggagat-ataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcataccttctgccttcaa |
239 |
Q |
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| |||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
12050999 |
cagagaccataaagaatagtagtatataaaagttggctcattttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgccttgaa |
12050900 |
T |
|
| Q |
240 |
gcagcattacaaatttca |
257 |
Q |
| |
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||||||||||| |||||| |
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| T |
12050899 |
gcagcattacatatttca |
12050882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 12046860 - 12046668
Alignment:
| Q |
38 |
tattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatctcataattaaactgaaacaaggttgaggaaaaaag |
137 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
12046860 |
tattctttataatcaacctcatattataagttacatgagcattcttaaattgatatttagaaatctcataatttaactgaaacagggttgaggaaaaaag |
12046761 |
T |
|
| Q |
138 |
tggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcatacctt |
229 |
Q |
| |
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|||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12046760 |
tggcaaagaccataaagaatagtagtatataaaagttgactcaatttttaactgtgtgagattgttcactttttcaatatgatttcatacctt |
12046668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 12066592 - 12066339
Alignment:
| Q |
4 |
actacttacataagatcactttttcaacttagcatattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatct |
103 |
Q |
| |
|
||||||| ||||||||| |||| |||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
12066592 |
actacttgtataagatcaattttccaacgtagcaaattctttataatcaacctcatattataagttacataagcattcttaaattgatatttagaaatat |
12066493 |
T |
|
| Q |
104 |
cataattaaactgaaacaaggttgaggaaaaaagtggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtt |
202 |
Q |
| |
|
||||||| || |||||||| ||||||||||||| |||| ||| ||| ||||| || ||||||||||||||||||||||||||||| ||| ||||| || |
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| T |
12066492 |
cataattgaattgaaacaaagttgaggaaaaaaatggcaaagaccatatagaatcgtagtatataaaagttgactcaatttttaactctgttagattatt |
12066393 |
T |
|
| Q |
203 |
tactttttcaatatgatttcataccttctgccttcaagcagcattacaaatttca |
257 |
Q |
| |
|
|| ||||||||| ||||||| |||||||||||| ||||||||||||| |||||| |
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| T |
12066392 |
cac-ttttcaatacgatttcaaaccttctgccttgaagcagcattacatatttca |
12066339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 12058447 - 12058210
Alignment:
| Q |
4 |
actacttacataagatcactttttcaacttagcatattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatct |
103 |
Q |
| |
|
|||||||| |||||||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
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|
| T |
12058447 |
actacttatataagatcacttttccagcgtagcaaattctttataatcaacctcacattataagttacataagcattcataaattgatatttagaaatat |
12058348 |
T |
|
| Q |
104 |
cataattaaactgaaacaaggttgaggaaaaaagtggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtt |
202 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||| |||||||||| |||||||||||||||| ||||| |||| ||||| || ||||||| |
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| T |
12058347 |
cataattgaactgaaaca---------caaaaagtggtagagaccataaagaatattggtatataaaagttggctcaa-ttttgactgtatgggattgtt |
12058258 |
T |
|
| Q |
203 |
tactttttcaatatgatttcataccttctgccttcaagcagcattaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12058257 |
cactttttcaatatgatttcataccttctgccttcaagcagcattaca |
12058210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 12063942 - 12063790
Alignment:
| Q |
71 |
cataagcattcttaaattgatatttagaaatctcataattaaactgaaacaaggttgaggaaaaaagtggcggagat-ataaagaatagtggtatataaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
12063942 |
cataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagaaaaaaagtggcggagatcataaagaatagtggtatataaa |
12063843 |
T |
|
| Q |
170 |
agttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcat |
224 |
Q |
| |
|
||||| |||||| |||||| | |||||||||| |||||||||||| ||||||| |
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|
| T |
12063842 |
agttggctcaatatttaac--tatgagattgttcgctttttcaatataatttcat |
12063790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 30353515 - 30353749
Alignment:
| Q |
23 |
tttttcaacttagcatattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatct-cataattaaactgaaaca |
121 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||| | |||| |||||||||| |
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|
| T |
30353515 |
ttttccaacgtagcagattctttataatcaacctgaaattataagttacataagaattcttaaattgatatttagaaatctaaaaaattgaactgaaaca |
30353614 |
T |
|
| Q |
122 |
aggttgaggaaaaaagtggcggaga-tataaagaatagtggtatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatt |
220 |
Q |
| |
|
||||||||| | ||||||| |||| ||||||||||||| |||||||| |||| ||||||||||||| | || ||||||| || |||||||||| ||| |
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|
| T |
30353615 |
gggttgaggagacaagtggcagagaccataaagaatagtgatatataaaggttggctcaatttttaac--tatgggattgttcaccttttcaatataatt |
30353712 |
T |
|
| Q |
221 |
tcataccttctgccttcaagcagcattacaaatttca |
257 |
Q |
| |
|
|||||||||||| ||| ||||| |||| || |||||| |
|
|
| T |
30353713 |
tcataccttctggcttgaagcaacattgcatatttca |
30353749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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