View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4859_low_1 (Length: 820)

Name: NF4859_low_1
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4859_low_1
NF4859_low_1
[»] chr4 (8 HSPs)
chr4 (17-547)||(49583343-49583873)
chr4 (548-797)||(49583037-49583286)
chr4 (34-198)||(49588989-49589153)
chr4 (555-680)||(5198998-5199124)
chr4 (588-672)||(4848615-4848699)
chr4 (548-625)||(15522606-15522683)
chr4 (657-726)||(29866154-29866223)
chr4 (461-494)||(49588574-49588607)
[»] chr5 (2 HSPs)
chr5 (613-734)||(37247603-37247723)
chr5 (661-704)||(27983524-27983567)
[»] chr2 (1 HSPs)
chr2 (657-734)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (588-679)||(7411339-7411429)
chr8 (616-684)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (611-686)||(6134221-6134296)
chr6 (622-682)||(2721839-2721899)
[»] chr1 (4 HSPs)
chr1 (607-727)||(26828549-26828669)
chr1 (666-738)||(34664919-34664991)
chr1 (567-635)||(35811949-35812017)
chr1 (548-597)||(16424901-16424950)


Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Complemental strand, 49583873 - 49583343
Alignment:
Q  17 aagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583873 aagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatata 49583774  T
Q  117 taaaccaaggactaaaccggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttcatgctcctcatgcatc 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583773 taaaccaaggactaaaccggcctcttcaatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttcatgctcctcatgcatc 49583674  T
Q  217 ccaatctttgtttcttcccgaatataataactctttatccaagttattgggataggaaatgctatttgaaagttgtggtgtatactttctgcctcggtgt 316  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  49583673 ccaatctttgtttcttcccgaatatcataactctttatccaagttattgggataggtaatcctatttgaaagttgtggtgtatactttctgcctcggtgt 49583574  T
Q  317 tattttgcaacaaaatatactcagactttgaaattaaaattggaagttcagcctggtaaatttcacccacctcaacagatgtttccggatcatcaaaaac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583573 tattttgcaacaaaatatactcagactttgaaattaaaattggaagttcagcctggtaaatttcacccacctcaacagatgtttccggatcatcaaaaac 49583474  T
Q  417 accatatttaatggaccacggaagtgattgttcatctggttcagctgcattcacctgtccaaaaatttaaatatatttaaagggagcatatatatacaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  49583473 accatatttaatggaccacggaagtgattgttcatctggttcagctgcattcacctgtccaaaaatttaaatatatttaaagatagcatatatttacaat 49583374  T
Q  517 agttggttttaaggcaaattgagtttgctct 547  Q
    |||||||||||||| ||||||||||||||||    
T  49583373 agttggttttaaggaaaattgagtttgctct 49583343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 548 - 797
Target Start/End: Complemental strand, 49583286 - 49583037
Alignment:
Q  548 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583286 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 49583187  T
Q  648 taatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaa 747  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583186 taatttttataagacttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaa 49583087  T
Q  748 cgcaaccacaaacttgactgagacctttatttaaaatcttggatatgata 797  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49583086 cgcaaccacaaacttgactgagacctttatttaaaaccttggatatgata 49583037  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 49589153 - 49588989
Alignment:
Q  34 ccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatatataaaccaaggactaaac 133  Q
    |||||||||||||||| | | |||||||| ||||||||||  |||||  ||||||||| ||||||||||||||||||| |||| || ||||||||||||     
T  49589153 ccataatagaatgacagtttatccttcattttcttattgcgtataaaccttttcacttgaacgaagttcttcccaaatgtataaaagccaaggactaaat 49589054  T
Q  134 cggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgt 198  Q
     |||||||||||||||||||||| | ||| ||| ||| ||| |||||||||||| ||||||||||    
T  49589053 tggcctcttcgatttcagtccaggtatcagttcaagaaccatgaacaagaatcttccctttatgt 49588989  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 555 - 680
Target Start/End: Complemental strand, 5199124 - 5198998
Alignment:
Q  555 aaattcattactaaattatgaaaataattacacta-tgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaattt 653  Q
    ||||||||||| |||||||||||| ||||| | || |||||||| ||||||| |||||||||||||| ||||||||| |||| |||| ||||| ||||||    
T  5199124 aaattcattacaaaattatgaaaagaattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataattt 5199025  T
Q  654 ttataagaattatgcaatgttgtgatt 680  Q
    | |||| | || ||||||||| |||||    
T  5199024 taataatatttgtgcaatgttatgatt 5198998  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 588 - 672
Target Start/End: Original strand, 4848615 - 4848699
Alignment:
Q  588 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatg 672  Q
    |||||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || |||||||    
T  4848615 tatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataattttaataatatttgtgcaatg 4848699  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 15522683 - 15522606
Alignment:
Q  548 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctatt 625  Q
    |||||| |||||||||||  ||| ||||||||||||||| ||| |||||| ||| ||| ||| |||||||||| ||||    
T  15522683 aagaaacaaattcattacataataatgaaaataattacattataaaattatgaataaacaataagaaattaagttatt 15522606  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 726
Target Start/End: Original strand, 29866154 - 29866223
Alignment:
Q  657 taagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaaca 726  Q
    ||||| || |||||||||||||||||||||| |  |||||||||||||  | || |||||||| ||||||    
T  29866154 taagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaacgcaacatcagtaaca 29866223  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 494
Target Start/End: Complemental strand, 49588607 - 49588574
Alignment:
Q  461 ctgcattcacctgtccaaaaatttaaatatattt 494  Q
    ||||||||||||||||||| ||||||||||||||    
T  49588607 ctgcattcacctgtccaaatatttaaatatattt 49588574  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 613 - 734
Target Start/End: Original strand, 37247603 - 37247723
Alignment:
Q  613 aaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatg 712  Q
    |||||||| ||||||||| |||| ||||| |||| | ||||  |||| | || |||| ||||||||||||||||| | ||||||||||||||  | || |    
T  37247603 aaattaagttattatacactatatgatagaataaatgattta-ataatatttgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacg 37247701  T
Q  713 caacatctgtaacaatcgaaat 734  Q
    ||||||| |||||| |||||||    
T  37247702 caacatccgtaacactcgaaat 37247723  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 27983567 - 27983524
Alignment:
Q  661 aattatgcaatgttgtgattaattcacgctgcgacaaccacaat 704  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||    
T  27983567 aattgtgcaatgttgtgattaattcaccctgcgacgaccacaat 27983524  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 734
Target Start/End: Original strand, 5430280 - 5430357
Alignment:
Q  657 taagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaat 734  Q
    ||||| || |||||| ||||||||||||||| | ||||||||||||||  | ||||||||||| ||||||| ||||||    
T  5430280 taagagttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaat 5430357  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 679
Target Start/End: Complemental strand, 7411429 - 7411339
Alignment:
Q  588 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgat 679  Q
    |||||||  ||||||||| ||| |||||||||| ||||||||| |||||||||  |||| ||||||| |||||| || || |||||||||||    
T  7411429 tatgaaaagaagaagaaacaat-agaaattaagttattatacattataagatatcataaataattttaataagatttgtgaaatgttgtgat 7411339  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 684
Target Start/End: Complemental strand, 3424372 - 3424305
Alignment:
Q  616 ttaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaatt 684  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||  ||| |||| ||||||||||||||    
T  3424372 ttaagttattatacattatatgatagtataaataatttttataa-tattgtgcattgttgtgattaatt 3424305  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 611 - 686
Target Start/End: Complemental strand, 6134296 - 6134221
Alignment:
Q  611 agaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattca 686  Q
    |||||| ||| ||||||||| |||  |||||||||| | ||||| |||||| || |||||||||||||||||||||    
T  6134296 agaaatcaagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 6134221  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 2721839 - 2721899
Alignment:
Q  622 tattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaa 682  Q
    ||||||||| |||| |||||||||| ||||||| |||| | |||||||| |||||||||||    
T  2721839 tattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaa 2721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 727
Target Start/End: Original strand, 26828549 - 26828669
Alignment:
Q  607 aatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgc 706  Q
    |||||||||||||| | ||  ||| |||| | |||||||| ||| ||| |||| | || ||||||||||||||||||| || | |||||||  |||||      
T  26828549 aatgagaaattaagttttttcacattatatgttagtataaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgacaataacaatct 26828648  T
Q  707 gcaatgcaacatctgtaacaa 727  Q
    | |||||||||||| ||||||    
T  26828649 gtaatgcaacatctataacaa 26828669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 666 - 738
Target Start/End: Original strand, 34664919 - 34664991
Alignment:
Q  666 tgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcg 738  Q
    ||||||||||| |||||||||  | | |||||||||||| |  ||||||||||| ||||||| ||||||||||    
T  34664919 tgcaatgttgtaattaattcataccgtgacaaccacaatccataatgcaacatccgtaacaaccgaaattgcg 34664991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 567 - 635
Target Start/End: Original strand, 35811949 - 35812017
Alignment:
Q  567 aaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatata 635  Q
    |||||||  ||| ||||||| |||| ||||||||||||| | |||||||||||| ||||||||| ||||    
T  35811949 aaattattgaaagaattacattatggaattaagaagaaacagtgagaaattaagttattatacattata 35812017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 16424950 - 16424901
Alignment:
Q  548 aagaaataaattcattactaaattatgaaaataattacactatgaaatta 597  Q
    |||||| ||||||||||| |||||| |||||||||| || ||||||||||    
T  16424950 aagaaacaaattcattacaaaattaagaaaataatttcattatgaaatta 16424901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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