View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859_low_2 (Length: 455)
Name: NF4859_low_2
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 37 - 438
Target Start/End: Original strand, 36733674 - 36734075
Alignment:
| Q |
37 |
tggacatcatcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
136 |
Q |
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| T |
36733674 |
tggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
36733773 |
T |
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| Q |
137 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
236 |
Q |
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| T |
36733774 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
36733873 |
T |
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| Q |
237 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
336 |
Q |
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| T |
36733874 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
36733973 |
T |
|
| Q |
337 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36733974 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
36734073 |
T |
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| Q |
437 |
tt |
438 |
Q |
| |
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|| |
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| T |
36734074 |
tt |
36734075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
78 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
177 |
Q |
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| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
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| Q |
178 |
taaaactcacgaaac |
192 |
Q |
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| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 24939511 - 24939620
Alignment:
| Q |
98 |
tatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatt |
197 |
Q |
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| T |
24939511 |
tatggacccataatgcaacttttcctaggctccgttccttgtatagtaacttcaagtccaaaaatagccaaagagtttcttaaaactcacgaaacttcct |
24939610 |
T |
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| Q |
198 |
tctccaaccg |
207 |
Q |
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|||||||||| |
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| T |
24939611 |
tctccaaccg |
24939620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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