View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859_low_3 (Length: 433)
Name: NF4859_low_3
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 1416662 - 1416485
Alignment:
| Q |
19 |
atgcatgcacacaaatttcattaattaaaccgctaggattaagtgaaagaagttgggtgttttgggaacatttatgtacaca--taggacaaaggaaagg |
116 |
Q |
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| T |
1416662 |
atgcatgcacacaaatttcattaattaaaccgctaggattaagtgaaagaagttgggtgttttgggaacatttatgtacacacataggacaaaggaaagg |
1416563 |
T |
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| Q |
117 |
aaagaggggaccctatagtgtgctctattgtcaaaactatactaattatatccactagagatatacatataacatata |
194 |
Q |
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| T |
1416562 |
aaagaggggaccctatagtgtgctctattgtcaaaactatactaattatatccactagagatatacatataacatata |
1416485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 1416360 - 1416209
Alignment:
| Q |
278 |
gaaagtaaacatcttgatcattcctttcttcagttttagctgaagagatnnnnnnnnnnnnnnnnnnn--agttgtgaggaataattatttagttttgtt |
375 |
Q |
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| T |
1416360 |
gaaagtaaacatcttgatcattcctttcttcagttttagctgaagagattctctctctctatctctctctagttgtgaggaatatttatttagttttgtt |
1416261 |
T |
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| Q |
376 |
gactaccgacacccttatttttcccaaaaaagacattctaccttcatctctc |
427 |
Q |
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| T |
1416260 |
gactaccgacacccttatttttcccaaaaaagacattctaccttcatttctc |
1416209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 1416438 - 1416381
Alignment:
| Q |
196 |
ctgaaaataagcccaatgctcagtctgtaccatcaatcttcactatagctgaagagat |
253 |
Q |
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| T |
1416438 |
ctgaaaataagcccaatgctcagtctgtaccatcaatcttcactatagctgaagagat |
1416381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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