View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859_low_8 (Length: 251)
Name: NF4859_low_8
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859_low_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 45550545 - 45550308
Alignment:
| Q |
14 |
atatataccttagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttaca |
113 |
Q |
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| T |
45550545 |
atatataccttagaaacttaggtatgatcggttaagttttgttaaaaatagattcaatgaaaacaatacaagacaatagagacgttcatttttatttaca |
45550446 |
T |
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| Q |
114 |
ttgagattcaataaatttcttggattaggataaaatgtgaattttactctttctccagtgaccctaacaatttgttttccattgagttaatactttcatg |
213 |
Q |
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| T |
45550445 |
ttgagattcaataaatttcttggattaggataaaatgtgaattttactctttctccagtgacactaacaatttgttttccattgagttaatactttcatg |
45550346 |
T |
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| Q |
214 |
tgtgttggcttccagaaagtgatgaaataaaagacatt |
251 |
Q |
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| T |
45550345 |
tgtgttggcttccagaaagtgatgaaataaaagacatt |
45550308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 45544410 - 45544343
Alignment:
| Q |
64 |
gattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaattt |
131 |
Q |
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| T |
45544410 |
gattcaatgaaaataatataagtcaatagactcattcttttttatttacattgatattcaatcaattt |
45544343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 45545188 - 45545138
Alignment:
| Q |
200 |
ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacat |
250 |
Q |
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| T |
45545188 |
ttaatactttcatttgcgttggcttacaggaagtgatgaaataaaagacat |
45545138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 45544281 - 45544237
Alignment:
| Q |
207 |
tttcatgtgtgttggcttccagaaagtgatgaaataaaagacatt |
251 |
Q |
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| T |
45544281 |
tttcatgtgtgttggcttacagaaagtaatgaaacaaaagacatt |
45544237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 36615875 - 36615992
Alignment:
| Q |
14 |
atatataccttagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttaca |
113 |
Q |
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|||| ||||||||||| ||| |||||| | || |||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||| || |
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| T |
36615875 |
atatttaccttagaaatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgca |
36615974 |
T |
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| Q |
114 |
ttgagattcaataaattt |
131 |
Q |
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|||| ||||||| ||||| |
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| T |
36615975 |
ttgacattcaatcaattt |
36615992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 19670886 - 19670993
Alignment:
| Q |
48 |
agttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaatttcttgga-ttaggataa |
146 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||| ||||| |||||||| ||||| ||||| || ||||| |
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| T |
19670886 |
agttttgttaaaaatatattcaatgaaaataatacaagacaatatattcattcatttttatttgcattgtgattcaatcaattttttggagataagataa |
19670985 |
T |
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| Q |
147 |
aatgtgaa |
154 |
Q |
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| T |
19670986 |
aatgtgaa |
19670993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 19691998 - 19692060
Alignment:
| Q |
190 |
ttccattgag-ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacatt |
251 |
Q |
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| T |
19691998 |
ttccattgagattaatactttcatatgtgttggctcatagaaagtgattaaataaaatacatt |
19692060 |
T |
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