View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4859_low_9 (Length: 228)
Name: NF4859_low_9
Description: NF4859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4859_low_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 12054073 - 12053853
Alignment:
| Q |
8 |
ggatcaaagttgtgatttctatnnnnnnnnttgaactttttaacctgtcaatgctactattccagatagcacccccaaaactacactaccgatcaaacga |
107 |
Q |
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| T |
12054073 |
ggatcaaagttgtgatttctaaaaaaaaaattgaactttttaacctgtcaatgctactattccagatagcacccccagaactacactaccgatcaaacga |
12053974 |
T |
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| Q |
108 |
taagtcggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagt |
207 |
Q |
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| T |
12053973 |
caagttggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagt |
12053874 |
T |
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| Q |
208 |
cattcacttgtcatctttata |
228 |
Q |
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| T |
12053873 |
cattcacttgtcatctttata |
12053853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 12075866 - 12075724
Alignment:
| Q |
86 |
aactacactaccgatcaaacgataagtcggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatct |
185 |
Q |
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| T |
12075866 |
aactacattaccaatcaaatgataagtcagagaagttggtaatttcagcggtgtggcacttgaacagtgtcattgggacaggaataaccaatagacatct |
12075767 |
T |
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| Q |
186 |
cagccaaattgcatttgttagtcattcacttgtcatctttata |
228 |
Q |
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| T |
12075766 |
ctgtcaaattgcaattgttagtcattcatttgttatctttata |
12075724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 12074510 - 12074331
Alignment:
| Q |
38 |
ttgaactttttaacctgtcaatgctactattccagatag-cacccccaaaactacactaccgatcaaacgataagtcggaaaagttggcagtttcggggg |
136 |
Q |
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| T |
12074510 |
ttgaactttttaaactgtgaatgctactactcaagaaactcaccactggaactccactaccaatcaaatgataagtcggagaagttagtagtttcagtgg |
12074411 |
T |
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| Q |
137 |
tgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagtcattcactt |
216 |
Q |
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| T |
12074410 |
tgtggcccttgaacagtgtcattaggacaggaataaccaaaagacatctctgtcaaattgcaattgttagtaattcactt |
12074331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 12062788 - 12062654
Alignment:
| Q |
38 |
ttgaactttttaacctgtcaatgctactattccagatagcaccccca----aaactacactaccgatcaaacgataagtcggaaaagttggcagtttcgg |
133 |
Q |
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| T |
12062788 |
ttgaacattttaaactgtcaatgctactattc-agacaccatcaccacttgaaactacacaacggatcaaatgataaggtagagaagttggtagtttcag |
12062690 |
T |
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| Q |
134 |
gggtgtggcactagaacagtgtcattgggacaggaa |
169 |
Q |
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| T |
12062689 |
cggtgtggcacttgaacagtgtcattgggacaggaa |
12062654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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