View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4860_high_4 (Length: 253)
Name: NF4860_high_4
Description: NF4860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4860_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 15857337 - 15857582
Alignment:
| Q |
6 |
aggagcagagagagagacctatttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaat |
105 |
Q |
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| T |
15857337 |
aggagcaacgagagagacctatttaaaacacaatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattcaaaagattttaaat |
15857436 |
T |
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| Q |
106 |
gttgaatcaaaatcaagttttatggtatatataaaaattatttgaagtcatttaattgttttcataatgcttgcatagcttatagaataatcttataatt |
205 |
Q |
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| T |
15857437 |
attgaatcaaaatcaagttttatggtatatataaaaattatttgaacacatttaattgttttcataatgcttgcatagcttatagaataatct--taatt |
15857534 |
T |
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| Q |
206 |
atccctattacaatgaagtctattgagagaagttttttaaattgaaat |
253 |
Q |
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| T |
15857535 |
atccctattacaatgaagtctattgagagaagttttttaaattgaaat |
15857582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 31781797 - 31781859
Alignment:
| Q |
28 |
ttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcatt |
90 |
Q |
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| T |
31781797 |
ttaaaacatgatgatttttatgatcttgatggtgaaattttatttgaagaattaaaattcatt |
31781859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 37864691 - 37864791
Alignment:
| Q |
25 |
tatttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagtt |
124 |
Q |
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| T |
37864691 |
tatttaaaacatggtaattcatatgatcttcatggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatcaaaatcaagtt |
37864790 |
T |
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| Q |
125 |
t |
125 |
Q |
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| T |
37864791 |
t |
37864791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 17896614 - 17896670
Alignment:
| Q |
62 |
aaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaat |
118 |
Q |
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| T |
17896614 |
aaattctatttgaaaaattagaagtcattcacgaggttttaaatgttgaatcaaaat |
17896670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 48229214 - 48229314
Alignment:
| Q |
29 |
taaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagttttat |
128 |
Q |
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| T |
48229214 |
taaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatgaatcaaaataaagttatat |
48229313 |
T |
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| Q |
129 |
g |
129 |
Q |
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| T |
48229314 |
g |
48229314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 30140038 - 30140090
Alignment:
| Q |
77 |
aattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagttttatg |
129 |
Q |
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| T |
30140038 |
aattaaaagtcctcaaagacattttaaatgttgaatcaaaattaagttttatg |
30140090 |
T |
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