View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4860_low_1 (Length: 520)
Name: NF4860_low_1
Description: NF4860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4860_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 32 - 502
Target Start/End: Complemental strand, 14801843 - 14801373
Alignment:
| Q |
32 |
ttaagtaccaggcaaaataccgttatgatcaacaacaaaaattgaatcaaaaccaaagcagaacttgaataaaaattcaatccttatgagattaaatgag |
131 |
Q |
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| T |
14801843 |
ttaagtaccaggcaaaataccgttatgatcaacaacaaaaattgaatcaaaaccaaagcagaacttgaataaaaattcaatccttatgagattaaatgag |
14801744 |
T |
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| Q |
132 |
tcttatgtggctgtgtgatcacaattattgcaaatggagcttcttaaattgtttattattgtaaatggaagcgttttcctaatatgaacaaagtattttc |
231 |
Q |
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| T |
14801743 |
tcttatgtggctgtgtgatcacaattattgcaaatggagcttcttaaattgtttattattgtaaatggaagcgttttcctaatatgaacaaagtattttc |
14801644 |
T |
|
| Q |
232 |
tagcctcattcagcatgagaggcaaaatagtttagatgtccctgaagatccacgcgtgattgttaacgcggttaatggaagaaggttaaatcgtggatcc |
331 |
Q |
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| T |
14801643 |
tagcctcattcagcatgagaggcaaaatagtttagatgtccctgaagatccacgcgtgattgttaacgcggttaatggaagaaggttaaatcgtggatcc |
14801544 |
T |
|
| Q |
332 |
agttgaaactttagtggatctgctgggcgaggagaatgaaattcaacggtgtgctcataatgtggcaaactaggtcacactgtggtcattacctatcgaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14801543 |
agttgaaactttagtggatctgctgggcgaggagaatgaaattcaacggtgtgctcataatgtggcaaactaggtcacactgcggtcattacctatcgaa |
14801444 |
T |
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| Q |
432 |
agcacgtcttccctctaggttttcaattcatgatttctactgtaagtaattgtattgataacagtaaaaga |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14801443 |
agcacgtcttccctctaggttttcaattcatgatttctactgtaagtaattgtattgataacagtaaaaga |
14801373 |
T |
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