View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4860_low_3 (Length: 358)
Name: NF4860_low_3
Description: NF4860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4860_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 154 - 348
Target Start/End: Complemental strand, 4834138 - 4833947
Alignment:
| Q |
154 |
ttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgttgtctaatctccaatcttattgatagaacattaatccaacaagtttttaaatta |
253 |
Q |
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| T |
4834138 |
ttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgttgtctaatctccaatcttattgatagaacataaatccaacaagtttttaaatta |
4834039 |
T |
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| Q |
254 |
ccatcaatttccaaaaatgagaaaagaatgataggatattactaagtactccatgaagttttaataatgttaactcaatgtgcacgagccctttg |
348 |
Q |
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| T |
4834038 |
ccatcaatttccaaaaatgagaaaagaatgataggatattagtaagtactccatgaagttt---taatgttaactcaatgtacatgagccctttg |
4833947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 4834358 - 4834294
Alignment:
| Q |
18 |
caatctagacacaaatacaacacttagggggtaatgttttccatatttataaggtgaagagtacg |
82 |
Q |
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| T |
4834358 |
caatctagacacaaatacaacacttagggggtagtgttctccatatttataaggtgaagagtacg |
4834294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 4831811 - 4831777
Alignment:
| Q |
166 |
tacatgaaaaaagaaaggcctgcactaactttgtt |
200 |
Q |
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| T |
4831811 |
tacatgaaaaaagaaaggcctgcactaactttgtt |
4831777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 4831703 - 4831667
Alignment:
| Q |
282 |
tgataggatattactaagtactccatgaagttttaat |
318 |
Q |
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| T |
4831703 |
tgataggatattactaagtactccatgaaattttaat |
4831667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 4834256 - 4834221
Alignment:
| Q |
120 |
attgaatgtactgcaagtcaatactgattagctgtt |
155 |
Q |
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| T |
4834256 |
attgaatgtactgcaattcaatactgattagctgtt |
4834221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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