View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4860_low_4 (Length: 286)
Name: NF4860_low_4
Description: NF4860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4860_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 15857748 - 15857969
Alignment:
| Q |
50 |
cctatttcatcccattctgaagtctttgcaagaagcatgcctagtcgtcattcatcttccacaattatactatttccttttcttattctagggtttgaaa |
149 |
Q |
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| T |
15857748 |
cctatttcatcccattctgaagtctttgcaagaagcatgcctagtcgtcattcatcttctacaattatactatttccttttcttattctagggtttgaaa |
15857847 |
T |
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| Q |
150 |
aacaagcatgctannnnnnnnggaggagcatgcgtagttattcttccacagtttaatatttttctcgaaaaaagtatatatattaccacttgaaacttgc |
249 |
Q |
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| T |
15857848 |
aacaagcatgctaatttttttggaggagcatgcgtagttattcttccacagtttattatttttctagaaaaaagtatatatattaccacttgaaacttgc |
15857947 |
T |
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| Q |
250 |
atgcacccaactttgtgaaaga |
271 |
Q |
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|||||||||||||||||||||| |
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| T |
15857948 |
atgcacccaactttgtgaaaga |
15857969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15857658 - 15857709
Alignment:
| Q |
1 |
ttgatttttcagcaaaa-aatataaaaacaatattcagataatctatgagcc |
51 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15857658 |
ttgatttttcagcaaaaaaatataaaaacaatattcagataatctatgagcc |
15857709 |
T |
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