View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4860_low_6 (Length: 250)

Name: NF4860_low_6
Description: NF4860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4860_low_6
NF4860_low_6
[»] chr1 (4 HSPs)
chr1 (1-239)||(13273724-13273962)
chr1 (1-68)||(38204383-38204451)
chr1 (24-69)||(15283314-15283359)
chr1 (33-101)||(32888279-32888347)
[»] chr5 (4 HSPs)
chr5 (22-104)||(5909543-5909625)
chr5 (11-104)||(22179459-22179552)
chr5 (18-104)||(24177187-24177273)
chr5 (16-101)||(27679680-27679765)
[»] chr7 (3 HSPs)
chr7 (1-104)||(30802254-30802357)
chr7 (18-104)||(34103053-34103139)
chr7 (25-101)||(33822005-33822081)
[»] chr6 (3 HSPs)
chr6 (22-104)||(31706349-31706431)
chr6 (22-102)||(6936970-6937050)
chr6 (39-100)||(14586091-14586152)
[»] chr2 (4 HSPs)
chr2 (22-104)||(18634543-18634625)
chr2 (23-104)||(31265804-31265885)
chr2 (2-104)||(44941294-44941395)
chr2 (25-68)||(33280670-33280713)
[»] chr4 (6 HSPs)
chr4 (1-86)||(32348806-32348891)
chr4 (22-68)||(48029228-48029274)
chr4 (24-104)||(56337978-56338058)
chr4 (18-104)||(55261564-55261650)
chr4 (25-98)||(34104919-34104992)
chr4 (26-87)||(53569591-53569652)
[»] scaffold0057 (1 HSPs)
scaffold0057 (22-87)||(3430-3495)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13273724 - 13273962
Alignment:
Q  1 caatacaatatatatacaaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattag 100  Q
    ||||||||| |||||| ||| || |||||||||||| |||||||||||||  | ||| ||||| |||||  |||||| |||||||||||||||||||||     
T  13273724 caatacaatgtatatataaacaatggtcagttgatacccaaacaaatcaattgttccaaccactatctctgtgaaccgtacacaaaagtggcattattaa 13273823  T
Q  101 ctttgaacactctttaaagaatgctaacggttgtcttcgaacactctttaaaaagataaataacatctttttattaatttaaattgtttgaatagtgtgt 200  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  13273824 ctttcaacactctttaaagaatgctaacagttgtctttgaacactctttaaaaagataaataacatatttttattaatttaaattgtttaaatagtgtgt 13273923  T
Q  201 cgaaggaactcgttaacaagatccgttgtctatatattc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13273924 cgaaggaactcgttaacaagatccgttgtctatatattc 13273962  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38204451 - 38204383
Alignment:
Q  1 caatacaatatatatacaaat-aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatct 68  Q
    |||||||| |||||||||||| |||||  ||| |||| |||||||||||||| ||||||||||||||||    
T  38204451 caatacaaaatatatacaaatcaaaggctagtcgatacccaaacaaatcaaagggtccgaccaccatct 38204383  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 15283359 - 15283314
Alignment:
Q  24 aggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctc 69  Q
    |||||||| ||||||||||||| ||||  |||||||||||||||||    
T  15283359 aggtcagtcgatatccaaacaagtcaaggggtccgaccaccatctc 15283314  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 32888279 - 32888347
Alignment:
Q  33 gatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagc 101  Q
    |||| ||||||||| |||| |||| ||||||||||||    ||||| |||||||||| |||||||||||    
T  32888279 gatacccaaacaaaacaaagggtctgaccaccatctctaacaaccaaacacaaaagttgcattattagc 32888347  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 5909625 - 5909543
Alignment:
Q  22 aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||   ||| | |||||||||||||| ||||| |||||    
T  5909625 aaaggttagttgatacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgcttt 5909543  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 22179552 - 22179459
Alignment:
Q  11 tatatacaaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||||| |||||||||| |||| |||||||||| ||| |||||||| ||||||||   ||||| ||| ||||  || |||||||||||||    
T  22179552 tatatacaaacaaaggtcagtcgatacccaaacaaattaaatggtccgactaccatctctgagaaccgtactcaaacatgacattattagcttt 22179459  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 24177187 - 24177273
Alignment:
Q  18 aaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||||||||| ||||||||| |||| |||   |||| |||||||||||   |||||||||| ||||||||| || ||||||||    
T  24177187 aaataaaggtcagtcgatatccaagcaaaacaacgagtccaaccaccatctctgagaaccatacataaaagtggctttgttagcttt 24177273  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 27679765 - 27679680
Alignment:
Q  16 acaaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagc 101  Q
    ||||| ||||||| || |||| ||||||| | || | |||||||||||||| ||   ||||| |||||||||||| ||||||||||    
T  27679765 acaaacaaaggtcggtcgatacccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaaagtgacattattagc 27679680  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30802357 - 30802254
Alignment:
Q  1 caatacaatatatatacaaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattag 100  Q
    ||||||||  |||||  ||| |||||| ||| |||| |||||||||||||| |||||||||||| ||||   ||||| |||||||| ||||| |||||||    
T  30802357 caatacaaagtatatgaaaacaaaggttagtcgatacccaaacaaatcaaagggtccgaccaccgtctctgagaaccgtacacaaacgtggcgttattag 30802258  T
Q  101 cttt 104  Q
    ||||    
T  30802257 cttt 30802254  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 34103053 - 34103139
Alignment:
Q  18 aaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||||||||| |||| ||||| |||  ||| |||||||||||||||||   || ||  |||||||| |||||||||| |||||    
T  34103053 aaataaaggtcagtcgatacccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggcttt 34103139  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 33822081 - 33822005
Alignment:
Q  25 ggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagc 101  Q
    ||||||| |||| |||||||||||||| |||||||| |||||||    ||||| ||||  |||||| ||||||||||    
T  33822081 ggtcagtcgatacccaaacaaatcaaagggtccgactaccatctatgagaaccgtacatgaaagtgacattattagc 33822005  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 31706349 - 31706431
Alignment:
Q  22 aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||||| ||||  ||||||||| |||||||||||||||||||||   || ||  ||||||| |||||||||||||||||    
T  31706349 aaaggtcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttt 31706431  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 6936970 - 6937050
Alignment:
Q  22 aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagct 102  Q
    |||||||||| |||| |||||||||||| | |||| |||| |||||||   ||||| ||||||||| |||| |||||||||    
T  6936970 aaaggtcagtcgatacccaaacaaatcatagggtctgaccgccatctctgagaaccgtacacaaaaatggcgttattagct 6937050  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 14586152 - 14586091
Alignment:
Q  39 caaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattag 100  Q
    |||||||| |||| | |||||||||||||||   | |||||||||||| |||||||||||||    
T  14586152 caaacaaagcaaaggatccgaccaccatctctaagcaccatacacaaatgtggcattattag 14586091  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 18634543 - 18634625
Alignment:
Q  22 aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    ||||||| |||||| |||||||| | |||| |||||||||||||||||   || ||||||||||| |||| ||||||||||||    
T  18634543 aaaggtcggttgatgtccaaacataacaaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagcttt 18634625  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 31265804 - 31265885
Alignment:
Q  23 aaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||    ||| ||||||||||||||| ||||| ||||||    
T  31265804 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgagaatcatacacaaaagtggtattatgagcttt 31265885  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 44941395 - 44941294
Alignment:
Q  2 aatacaatatatatacaaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagc 101  Q
    |||||||  |||||||||| || ||| ||||||||  |||||| |||||| | |||||||||||||||  |||||| |||||||| ||| |||| |||||    
T  44941395 aatacaaagtatatacaaagaa-ggttagttgatactcaaacacatcaaaggatccgaccaccatctctgtgaaccgtacacaaatgtgacattgttagc 44941297  T
Q  102 ttt 104  Q
    |||    
T  44941296 ttt 44941294  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 33280670 - 33280713
Alignment:
Q  25 ggtcagttgatatccaaacaaatcaaaaggtccgaccaccatct 68  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||    
T  33280670 ggtcagtcgatatccaaacaaagcaacaggtccgaccaccatct 33280713  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32348891 - 32348806
Alignment:
Q  1 caatacaatatatatacaaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaa 86  Q
    ||||||||  |||||||||| |||||| ||| |||| |||||||||||||| | |||||||||||||||   ||||| ||||||||    
T  32348891 caatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaaggatccgaccaccatctctgagaaccgtacacaaa 32348806  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 48029228 - 48029274
Alignment:
Q  22 aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatct 68  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  48029228 aaaggtcagttgatacccaaacaaaacaaatggtccgaccaccatct 48029274  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 56338058 - 56337978
Alignment:
Q  24 aggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||| |||| ||||||||| |||  ||||| ||||||||||    |||||||| |||||||||||||| ||||||||    
T  56338058 aggtcagtcgatacccaaacaaagcaaccggtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttt 56337978  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 55261564 - 55261650
Alignment:
Q  18 aaataaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattattagcttt 104  Q
    |||||||||||||| |||| |||  ||||  ||  ||||| |||||||||||   |||||||||||||||||||| || ||||||||    
T  55261564 aaataaaggtcagtcgatacccagtcaaagtaacgggtccaaccaccatctctgagaaccatacacaaaagtggctttgttagcttt 55261650  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 34104919 - 34104992
Alignment:
Q  25 ggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaagtggcattatt 98  Q
    ||||||| |||| ||||||| | |||| |||||||||||||||||   |||||||| ||||||  |||||||||    
T  34104919 ggtcagtcgatacccaaacataacaaagggtccgaccaccatctctgagaaccatatacaaaacaggcattatt 34104992  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 53569591 - 53569652
Alignment:
Q  26 gtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaa 87  Q
    ||||||||||| |||||||||  ||| |||||||||||||||||   ||||| |||||||||    
T  53569591 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaa 53569652  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 3495 - 3430
Alignment:
Q  22 aaaggtcagttgatatccaaacaaatcaaaaggtccgaccaccatctcactgaaccatacacaaaa 87  Q
    |||||||||| |||| |||||||||||||  ||||||||||||||||   ||||||||| ||||||    
T  3495 aaaggtcagtcgatacccaaacaaatcaacgggtccgaccaccatctatgtgaaccataaacaaaa 3430  T

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