View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4861-Insertion-1 (Length: 1016)
Name: NF4861-Insertion-1
Description: NF4861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4861-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 826; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 7 - 1014
Target Start/End: Complemental strand, 7006919 - 7005911
Alignment:
| Q |
7 |
ataaatgtatacaataaagtggctagtataaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaag |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7006919 |
ataaatgtatgcaataaagtggctagtataaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaag |
7006820 |
T |
|
| Q |
107 |
aagaagnnnnnnngttgcaatgtaaatagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagcca |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7006819 |
aagaagaaaaaaagttgcaatgtaaatagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagcca |
7006720 |
T |
|
| Q |
207 |
attgttcctcagtaaggggtggaaggtaagaaagtgtctcaaacttcttcttgccaattggtggccacacctataaatattatacataaaattgagtatt |
306 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7006719 |
attgatcctcagtaaggggtggaaggtatgaaagtgtttcaaacttcttcttgccaattggtggccaaacctataaatattatacataaaattgagtatt |
7006620 |
T |
|
| Q |
307 |
agggttaacaaaatttgataatcattaataattatgtcaactttgtagataaattttttctagaattatagtccnnnnnnnnnnnnnnnnngtgacattc |
406 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7006619 |
agggttaacaaaatttgacaatcattaataattatgtcaactttgtagataaattttttctagaattatagtccaattttttttctttt--gtgacattc |
7006522 |
T |
|
| Q |
407 |
tattttt-atgacatgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaattttatatggtatatacaaaaatatgg |
505 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7006521 |
tattttttatgacatgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaattttatatggtatatacaaaaatatgg |
7006422 |
T |
|
| Q |
506 |
actagggcttaggtgtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagca |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||| || |
|
|
| T |
7006421 |
actagggcttaggtgtattacctgcatacagttcactcttccaccattgcttgtgatggaggtaatgtcattgttggtcttcttggtcactgggaaacca |
7006322 |
T |
|
| Q |
606 |
gctgaggatttgagaccgatgaatggagcaaccaagttggcggagacgcggttaacggtggcgacagaggcggaggagatcaaagccatttttcctactc |
705 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7006321 |
gctgaggatttgagaccggtgaatggagcaaccaagttagcggagacgcggttaacggtggtgacagcggcggaggagatcaaagccatttttcctactc |
7006222 |
T |
|
| Q |
706 |
cttcttagttcaccaagtactcaacttttgcttctactgcttattgcttcaactcaaacttgctatatataatagtaaaatttggatgttacttatctaa |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7006221 |
cttcttagttcaccaagtactcaacttttgcttctactgcttattgcttcaactcaaacttgctatatataatagtaaaatttggatgttacttatctaa |
7006122 |
T |
|
| Q |
806 |
tggtatggaattgaaaggattggtggctgaaaattatggaccgttggattgaataattatggatattacataatattggccac-aaagagctttaggttt |
904 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7006121 |
tggtatggaattgaaaggattggtggctgtaaattttggaccgttggattgaataattatggatattacataatattggccacaaaagagctttaggttt |
7006022 |
T |
|
| Q |
905 |
tgaaatggtagccttatcgttaggtaccactatggtaatgccacgtggattttcctccataatcttatctcttcatggaaggtgcacatgaatgtgtga- |
1003 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
7006021 |
tgaaatggtagccttatcgttaggtaccactatggtaatgccacgtggattttcctccataatcttatctcttcattggaagtgcacatgaatgtgtgat |
7005922 |
T |
|
| Q |
1004 |
tgtggtgaagt |
1014 |
Q |
| |
|
||||||||||| |
|
|
| T |
7005921 |
tgtggtgaagt |
7005911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 36 - 351
Target Start/End: Complemental strand, 7009987 - 7009669
Alignment:
| Q |
36 |
aaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaagaag-aagnnnnnnng--ttgcaatgtaaa |
132 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||| |||| |||||| |||||||||||||| |||| ||| ||| | |||||||||||| |
|
|
| T |
7009987 |
aaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgatgtataatacttaaactctaatttaaaaaggaagaaagaaaggattgcaatgtaaa |
7009888 |
T |
|
| Q |
133 |
tagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaagg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7009887 |
tagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaagaggtggaagg |
7009788 |
T |
|
| Q |
233 |
taagaaagtgtctcaaacttcttcttgccaattggtggccacacctataaatattatacataaaattgagtattagggttaacaaaatttgataatcatt |
332 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||| | | | |
|
|
| T |
7009787 |
tatgaaagtgtctcaaacttcttcttgccaattggtggccacacctagaaatattatacatataattcattattagggttaacaaaatttgacagtttta |
7009688 |
T |
|
| Q |
333 |
aataattatgtcaactttg |
351 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
7009687 |
attaattatgtcaactttg |
7009669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 409 - 646
Target Start/End: Complemental strand, 7009602 - 7009362
Alignment:
| Q |
409 |
tttttatgacatgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaatt----ttatatggtatatacaaaaatatg |
504 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||| ||| |||||||||| |
|
|
| T |
7009602 |
ttttcatgacaagaataataatttaagtaaccttaaggtacatacatatgtaacataacatgaaattcaattaatttttgatggggtatgcaaaaatatg |
7009503 |
T |
|
| Q |
505 |
gactagggcttaggtgtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagc |
604 |
Q |
| |
|
|| || || |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7009502 |
gattatggattag-tgtattacctgcatacagttcactcttccaccattgcttgcaatggaggtaatgtcattgttggtctttttggtaactgggaaagc |
7009404 |
T |
|
| Q |
605 |
agctgaggatttgagaccgatgaatggagcaaccaagttggc |
646 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
7009403 |
agctgaggatttgagaccggtgaatggggcaaccaagttggc |
7009362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1358465 - 1358338
Alignment:
| Q |
152 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact |
251 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| || | ||||||||||| |||||||||||||||| |
|
|
| T |
1358465 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttggccaattgttctctggtcaatggtggaaggtatgaaagtgtctcaaact |
1358366 |
T |
|
| Q |
252 |
tcttcttgccaattggtggccacaccta |
279 |
Q |
| |
|
||||||||||||| || ||||||||||| |
|
|
| T |
1358365 |
tcttcttgccaataggaggccacaccta |
1358338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 1373856 - 1373725
Alignment:
| Q |
148 |
ctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctca |
247 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| || | |||||||| || ||||| |||||| |
|
|
| T |
1373856 |
ctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaagatatgaaagagtctca |
1373757 |
T |
|
| Q |
248 |
aacttcttcttgccaattggtggccacaccta |
279 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |
|
|
| T |
1373756 |
aacttcttcttgccaataggaggccacaccta |
1373725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1384213 - 1384086
Alignment:
| Q |
152 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact |
251 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| || | ||||||||||| ||||| |||||||||| |
|
|
| T |
1384213 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaaggtatgaaagagtctcaaact |
1384114 |
T |
|
| Q |
252 |
tcttcttgccaattggtggccacaccta |
279 |
Q |
| |
|
||||||||||||| || ||||||||||| |
|
|
| T |
1384113 |
tcttcttgccaataggaggccacaccta |
1384086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1390318 - 1390191
Alignment:
| Q |
152 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact |
251 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| || | ||||||||||| ||||| |||||||||| |
|
|
| T |
1390318 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaaggtatgaaagagtctcaaact |
1390219 |
T |
|
| Q |
252 |
tcttcttgccaattggtggccacaccta |
279 |
Q |
| |
|
||||||||||||| || ||||||||||| |
|
|
| T |
1390218 |
tcttcttgccaataggaggccacaccta |
1390191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 152 - 281
Target Start/End: Complemental strand, 1394564 - 1394435
Alignment:
| Q |
152 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact |
251 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| || | |||||||| || ||||| |||||||||| |
|
|
| T |
1394564 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaagatatgaaagagtctcaaact |
1394465 |
T |
|
| Q |
252 |
tcttcttgccaattggtggccacacctata |
281 |
Q |
| |
|
||||||||||||| || ||||||||||||| |
|
|
| T |
1394464 |
tcttcttgccaataggaggccacacctata |
1394435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1350559 - 1350432
Alignment:
| Q |
152 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact |
251 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| || | |||||||| || ||||| |||||||||| |
|
|
| T |
1350559 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaagatatgaaagagtctcaaact |
1350460 |
T |
|
| Q |
252 |
tcttcttgccaattggtggccacaccta |
279 |
Q |
| |
|
||||||||||||| || ||||||||||| |
|
|
| T |
1350459 |
tcttcttgccaataggaggccacaccta |
1350432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 581
Target Start/End: Complemental strand, 1393785 - 1393729
Alignment:
| Q |
525 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
581 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
1393785 |
acctgcatgcagtttactcttccaccattgcttgtaatggaggtaatgtctttgttg |
1393729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 581
Target Start/End: Complemental strand, 1350174 - 1350118
Alignment:
| Q |
525 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
581 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| || |||||||||||| |||||| |
|
|
| T |
1350174 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
1350118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 581
Target Start/End: Complemental strand, 1358129 - 1358073
Alignment:
| Q |
525 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
581 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
1358129 |
acctgcatgcagtttactcttccaccattgcttgtaatagaggtaatgtccttgttg |
1358073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 581
Target Start/End: Complemental strand, 1373472 - 1373416
Alignment:
| Q |
525 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
581 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| || |||||||||||| |||||| |
|
|
| T |
1373472 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
1373416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 1383748 - 1383693
Alignment:
| Q |
525 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt |
580 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || ||| |||||||| ||||| |
|
|
| T |
1383748 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
1383693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 1389853 - 1389798
Alignment:
| Q |
525 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt |
580 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || ||| |||||||| ||||| |
|
|
| T |
1389853 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
1389798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University