View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4861-Insertion-4 (Length: 835)
Name: NF4861-Insertion-4
Description: NF4861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4861-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 32715915 - 32716237
Alignment:
| Q |
7 |
atatagatgatagcatagcagtagtaaatggatccgaaaagcgtaaggtgaaaggaattgaaaagtgggaagaggatgaacctgcaaaggatgacgtatt |
106 |
Q |
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| T |
32715915 |
atatagatgatagcatagcagtagtaaatggatccgaaaagcgtaaggtgaaaggaattgaaaagtgggaagaggatgaacctgcaaaggatgacgtatt |
32716014 |
T |
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| Q |
107 |
ttctcagaggtggtttcattttcggttgaaacgatggacatggtagagtggaaaccgaagattggagctctgggattttgagtaacagtggaaatgaaaa |
206 |
Q |
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| T |
32716015 |
ttctcagaggtggtttcattttcggttgaaacgatggacatggtagagtggaaaccgaagattggagctctgggattttgagtaacagtggaaatgaaaa |
32716114 |
T |
|
| Q |
207 |
acctgacatgttattgtattttattattggattggatggagaattaaattattct-atcatgatattgcgtcaaccaaagtttgctgcagacatgtgacg |
305 |
Q |
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| T |
32716115 |
acctgacatgttattgtattttattattggattggatggagaattaaattattctaatcatgatattgcgtcaaccaaagtttgctgcagacatgtgacg |
32716214 |
T |
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| Q |
306 |
gaccaaatggccaacttgtccac |
328 |
Q |
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| T |
32716215 |
gaccaaatggccaacttgtccac |
32716237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 560 - 716
Target Start/End: Complemental strand, 11030661 - 11030505
Alignment:
| Q |
560 |
ttgtaatagccaaggacgaaactgctcatgtcatttgtttttcttctcatgctttatctgaattaactctctttcatgaaactgctccaattttctgtac |
659 |
Q |
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| T |
11030661 |
ttgtaatagccaaggacgaaactgctcatgtcatttctttttcttctcatgctttatctgaattaactctctttcatgaaattgctccaattttatgtac |
11030562 |
T |
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| Q |
660 |
gtaattttttggtctttgttagtcttctttatccttacatattgaggtattgcttgg |
716 |
Q |
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| T |
11030561 |
gtaattttttgttcttttttagtcttctttatcattacatattgaggtattgcttgg |
11030505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 394 - 553
Target Start/End: Original strand, 32717253 - 32717418
Alignment:
| Q |
394 |
gacgttgcagttggatttgaactttgatactgagttttaaaagttttttgagttttaatagctatttaccatttcgtctatatnnnnnnnnnnntagaaa |
493 |
Q |
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| T |
32717253 |
gacgttggagttggatttgaacttcgatactgagttttaaaagttttttgagttttaatagctatttaccattttgtctataaaaaaaaaaatatagaaa |
32717352 |
T |
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| Q |
494 |
atataattaacacggttgaa--ctatatgta----ttatcacgctagtcggagtacccttgcaaca |
553 |
Q |
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| T |
32717353 |
atataattaacacggttgaattatatatgtatcagttatcacgctagtcggagtacccttgcaaca |
32717418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 786 - 834
Target Start/End: Complemental strand, 11030442 - 11030394
Alignment:
| Q |
786 |
accatatattccggttctcatagtgccttcgaattttctctttgcatta |
834 |
Q |
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| T |
11030442 |
accatatattccggttctcatagtgccttcaaattttctctttgcatta |
11030394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 560 - 658
Target Start/End: Original strand, 39701700 - 39701798
Alignment:
| Q |
560 |
ttgtaatagccaaggacgaaactgctcatgtcatttgtttttcttctcatgctttatctgaattaactctctttcatgaaactgctccaattttctgta |
658 |
Q |
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| T |
39701700 |
ttgtaatagccaaggacaaaactgctcatgtcatttctttctctgctgatgctttatctgaatcttctctctttcacgaaactactccaattttctgta |
39701798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 560 - 658
Target Start/End: Original strand, 7485978 - 7486076
Alignment:
| Q |
560 |
ttgtaatagccaaggacgaaactgctcatgtcatttgtttttcttctcatgctttatctgaattaactctctttcatgaaactgctccaattttctgta |
658 |
Q |
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| T |
7485978 |
ttgtaatagccaaggacaaaactgctcatgtcatttctttctctgctgatgctttatctgaatcttctctctttcacgaaactactccaattttctgta |
7486076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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