View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4861-Insertion-7 (Length: 361)
Name: NF4861-Insertion-7
Description: NF4861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4861-Insertion-7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 26721785 - 26722139
Alignment:
| Q |
8 |
gttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnn-ctcattctcttattacttttaattt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
26721785 |
gttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttatctcattctcttcttacttttaattt |
26721884 |
T |
|
| Q |
107 |
cattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattat |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721885 |
cattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagccttggattat |
26721984 |
T |
|
| Q |
207 |
gatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
26721985 |
gatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcata |
26722084 |
T |
|
| Q |
307 |
atcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
361 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722085 |
atcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
26722139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 45117121 - 45116783
Alignment:
| Q |
11 |
agaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnn-ctcattctcttattacttttaatttcat |
109 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
45117121 |
agaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttatctcattctcttcttacttttaatttcat |
45117022 |
T |
|
| Q |
110 |
tttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117021 |
tttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgat |
45116922 |
T |
|
| Q |
210 |
ttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatc |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
45116921 |
ttgag-------------aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatc |
45116835 |
T |
|
| Q |
310 |
acaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
361 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116834 |
acgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
45116783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 2987256 - 2987595
Alignment:
| Q |
11 |
agaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnn--ctcattctcttattacttttaatttca |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
2987256 |
agaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctcattctcttcttacttttaatttca |
2987355 |
T |
|
| Q |
109 |
ttttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987356 |
ttttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatg- |
2987454 |
T |
|
| Q |
209 |
tttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataat |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2987455 |
------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataat |
2987542 |
T |
|
| Q |
309 |
cacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
361 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987543 |
cacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactca |
2987595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University