View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4861_low_1 (Length: 515)
Name: NF4861_low_1
Description: NF4861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4861_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 7668343 - 7668842
Alignment:
| Q |
1 |
catatatggaccttttgttgcaacttgcaactcgatggaagcgaagaaacatgtggaggatgaccatccaagatcgtgaacttggtgccgaaaaaattag |
100 |
Q |
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| T |
7668343 |
catatatggaccttttgttgcaacttgcaactcgatggaagcgaagaaacatgtggaggatgaccatccaagatcgtgaacttggtgccgagaaaattag |
7668442 |
T |
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| Q |
101 |
acctgttattttgcttaatgatcaactaagcactagaataataatgcattagccttaaaagatgtgaattgatatgggacactaaccttaactttccatt |
200 |
Q |
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| T |
7668443 |
acctgttattttgcttaatgatcaactaagcactagaataataatgcattagccttaaaagatgtgaattgatatgggacactaaccttaactttccaat |
7668542 |
T |
|
| Q |
201 |
gtaagtattgttagctctagagaaatcatcagaaaccaatgatattnnnnnnnttgtgcatgttgctcttctaatcttctttgcagccaagagaagtttg |
300 |
Q |
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| T |
7668543 |
gtaagtattgttagctctagagaaatcatcagaaaccaatgatattaaaaaatttgtgcatgttgctcttctaatcttctttgcagccaagagaagtttg |
7668642 |
T |
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| Q |
301 |
ctcatcaccagaaagagctgcaaatacaataacacaattcacaaagatggtagtttagagaccaacttcatagatcgagaatagtttatagactatttat |
400 |
Q |
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| T |
7668643 |
ctcatcaccagaaagagctgcaaatacaataacacaattcacaaagatggtagtttagagactaacttcatagatcgagaatagtttatagactatttat |
7668742 |
T |
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| Q |
401 |
tacatttccgtagttcaaagactaaataggagagaatgtgatagtttagcgattgaattgaaagttcactatggaaaacagaaagatgaaaaagaatact |
500 |
Q |
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| T |
7668743 |
tacatttccgtagttcaaagactaaataggagagaatgtgatagtttagcgattgaattgaaagttcactctggaaaacagaaggatgaaaaagaatact |
7668842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 7089004 - 7089339
Alignment:
| Q |
4 |
atatggaccttttgttgcaacttgcaactcgatggaagcgaagaaacatgtggaggatgaccatccaagatcgtgaacttggtgccgaaaaaattagacc |
103 |
Q |
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| T |
7089004 |
atatgaaccttttgttgcaacttgcaactcgatggaagcgaagacacatgtggaggatgaccatctaagattgtgaacttggtgccgagaaaattagacc |
7089103 |
T |
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| Q |
104 |
tgttattttgcttaatgatcaactaagcactagaataataatgcattagcc-ttaaaagatgtgaattgatatgggacactaaccttaactttccattgt |
202 |
Q |
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| T |
7089104 |
tgtt-cattgcttaatgatcaagtaaacagtagaataataatgcattaaccatgaaaaaatgtggattgattgaggagactaaccttaactttccaatgt |
7089202 |
T |
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| Q |
203 |
aagtattgttagctctagagaaatcatcagaaaccaatgatattnnnnnnnttgtgcatgttgctcttctaatcttctttgcagccaagagaagtttgct |
302 |
Q |
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| T |
7089203 |
aagtattgttagctctagagaaatcatcagaaaccaatgatattaaaaattctgtgcatgttgctcttctaatcttctttgctgccaagagaagtttgct |
7089302 |
T |
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| Q |
303 |
c--atcaccagaaagagctgcaaatacaataacacaa |
337 |
Q |
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| T |
7089303 |
catatcaccagaaagagctgcaaatacaataacacaa |
7089339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 370 - 500
Target Start/End: Original strand, 7089340 - 7089470
Alignment:
| Q |
370 |
atagatcgagaatagtttatagactatttattacatttccgtagttcaaagactaaataggagagaatgtgatagtttagcgattgaattgaaagttcac |
469 |
Q |
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| T |
7089340 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaagtttac |
7089439 |
T |
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| Q |
470 |
tatggaaaacagaaagatgaaaaagaatact |
500 |
Q |
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| T |
7089440 |
tctggaaaacagaaagatgaaaaagaatact |
7089470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 3462183 - 3462253
Alignment:
| Q |
379 |
gaatagtttatagactatttattacatttccgtagttcaaagactaaataggagagaatgtgatagtttag |
449 |
Q |
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| T |
3462183 |
gaatattttagagactatttattacgtttctgtagttcagagatcaaatagaagagaaaatgatagtttag |
3462253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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