View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4861_low_3 (Length: 375)

Name: NF4861_low_3
Description: NF4861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4861_low_3
NF4861_low_3
[»] chr6 (1 HSPs)
chr6 (19-361)||(15556824-15557165)
[»] scaffold0223 (1 HSPs)
scaffold0223 (19-357)||(14803-15140)
[»] chr8 (2 HSPs)
chr8 (97-359)||(24025639-24025900)
chr8 (25-197)||(24031997-24032169)
[»] scaffold0665 (1 HSPs)
scaffold0665 (80-356)||(5221-5496)
[»] scaffold0356 (1 HSPs)
scaffold0356 (80-356)||(7843-8118)
[»] chr5 (1 HSPs)
chr5 (253-361)||(24055636-24055744)
[»] scaffold0696 (1 HSPs)
scaffold0696 (206-326)||(4446-4566)
[»] chr4 (1 HSPs)
chr4 (205-341)||(22393166-22393302)
[»] chr1 (1 HSPs)
chr1 (206-326)||(8687141-8687261)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 15556824 - 15557165
Alignment:
Q  19 catcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtgcagtctgcaaaaccctccttcgaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  15556824 catcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgcaccgattgctgcttctgtgcagtctgcaaaaccctccttcgcaca 15556923  T
Q  119 agttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaattactcccaactgcttactccag 218  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15556924 agctttacgtggcactccgtcaacggctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaattactccc-actgcttactccag 15557022  T
Q  219 ggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaaacttcagaaa 318  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||    
T  15557023 ggggttagatttctgtaaaattaacctctgtggtcgtttggtattaaacaaaggtgacaaaccctatgcaaccaaatacatgactgccaaacttcagaaa 15557122  T
Q  319 ttatggaaagtctaaggaccatgtcatatgctttcccttggcc 361  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  15557123 ttatggaaagtcaaaggaccatgtcatatgctttcccttggcc 15557165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 15140 - 14803
Alignment:
Q  19 catcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtgcagtctgcaaaaccctccttcgaaca 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||| |||    
T  15140 catcctgcaatagtaatgatgctacagctgttccgacacaaattgttgctcctgctccgattgccgcacctgtgccgtctgcaaaaccctcattcgcaca 15041  T
Q  119 agttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaattactcccaactgcttactccag 218  Q
    || |||||||||||||| |||||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |    
T  15040 agctttacgtggcactctgtcaacggctgatcctctcccgctgccctctatccgtggagaaacgctatccatatcaattacaccc-accgcttactcccg 14942  T
Q  219 ggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaaacttcagaaa 318  Q
    |||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||    
T  14941 ggggttagatttctataaaattaactttcgtggtcgtttggtattaaacaaaggcgacaaaccctatgcaaccaaagacatcactgccaaacttcataaa 14842  T
Q  319 ttatggaaagtctaaggaccatgtcatatgctttccctt 357  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  14841 ttatggaaagtcaaaggaccatggcatatgctttccctt 14803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 97 - 359
Target Start/End: Original strand, 24025639 - 24025900
Alignment:
Q  97 ctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaat 196  Q
    |||||||| |||| || | ||| || |||||||| |||||||||||  ||||| || ||  ||| ||||||||| |||||||||||||| ||||||||||    
T  24025639 ctgcaaaatcctcttttgcacaggtgttacgtggtactccgtcaactactgattctatctcgtttccctctatctgtggagaaacgctagccatatcaat 24025738  T
Q  197 tactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaa 296  Q
    | |  ||| ||| ||||||| | || |||||||  |||||||||||||||| ||||||||||||||| |||||| |||||||| | |||||||||||| |    
T  24025739 ttcaacca-ctgtttactcctgtggtttagattattgtaaaattaacctccgtggtcgtttggtattgaacaaatgcgacaaaccatatgcaaccaaaga 24025837  T
Q  297 catcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttcccttgg 359  Q
     ||||| |||||||| |||||| |||||||| || |||||||||| |||||||| ||||||||    
T  24025838 tatcaccgccaaactacagaaagtatggaaaatcaaaggaccatggcatatgctatcccttgg 24025900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 24031997 - 24032169
Alignment:
Q  25 gcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtgcagtctgcaaaaccctccttcgaacaagtttt 124  Q
    ||||||||| ||  ||| || ||||||||||||| | |||| || |||||| ||| ||||||| ||||||| ||||||||||||| |||| ||  |  ||    
T  24031997 gcaatagtattgcggctgcaactgtcccgacacacaatgtttcttctgctcagatggctgcacctgtgcagactgcaaaaccctctttcgcaccggcgtt 24032096  T
Q  125 acgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaatt 197  Q
    ||||||||||||||||||   ||||||| ||  |||||||||||||||||||||||||||| |||||| ||||    
T  24032097 acgtggcactccgtcaactaatgatcctatctcgttgccctctatccgtggagaaacgctagccatattaatt 24032169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 356
Target Start/End: Original strand, 5221 - 5496
Alignment:
Q  80 tgctgcacttgtgcagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaa 179  Q
    |||||||| ||||||| ||||||||||||| || |  || | | |||||||  ||||||| ||  |||||||||||  | ||||||| |||| |||||||    
T  5221 tgctgcacctgtgcagactgcaaaaccctcatttgctcaggctctacgtggttctccgtccactactgatcctctcccgctgccctcgatccttggagaa 5320  T
Q  180 acgctatccatatcaattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaa 279  Q
    |||||| || || | ||| |  ||| |||||||||   | ||  | ||||  ||||||||||| || | ||||||| |||| || | |||||| |||||     
T  5321 acgctagccgtagctatttccacca-ctgcttactttcgaggtgtcgattattgtaaaattaatcttcgtggtcgtctggttttgagcaaaggtgacaag 5419  T
Q  280 acctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccct 356  Q
     | |||||||||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| |||||    
T  5420 ccgtatgcaaccaaagatatcaccgccaaactccagaagttatggaaagtcaaaggaccatggcatatgctgtccct 5496  T

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Target: scaffold0356 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 356
Target Start/End: Original strand, 7843 - 8118
Alignment:
Q  80 tgctgcacttgtgcagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaa 179  Q
    |||||||| ||||||| ||||||||||||| || |  || | | |||||||  ||||||| ||  |||||||||||  | ||||||| |||| |||||||    
T  7843 tgctgcacctgtgcagactgcaaaaccctcatttgctcaggctctacgtggttctccgtccactactgatcctctcccgctgccctcgatccttggagaa 7942  T
Q  180 acgctatccatatcaattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaa 279  Q
    |||||| || || | ||| |  ||| |||||||||   | ||  | ||||  ||||||||||| || | ||||||| |||| || | |||||| |||||     
T  7943 acgctagccgtagctatttccacca-ctgcttactttcgaggtgtcgattattgtaaaattaatcttcgtggtcgtctggttttgagcaaaggtgacaag 8041  T
Q  280 acctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccct 356  Q
     | |||||||||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| |||||    
T  8042 ccgtatgcaaccaaagatatcaccgccaaactccagaagttatggaaagtcaaaggaccatggcatatgctgtccct 8118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 361
Target Start/End: Original strand, 24055636 - 24055744
Alignment:
Q  253 cgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgcttt 352  Q
    |||||||||||||||||||| |||||| | |||||||||||  | |||||||||||| | |||||| ||||||||||| | || || || |||||||| |    
T  24055636 cgtttggtattaaacaaaggagacaaaccatatgcaaccaaggatatcactgccaaattacagaaaatatggaaagtcaaggggccctggcatatgctct 24055735  T
Q  353 cccttggcc 361  Q
    | |||||||    
T  24055736 ctcttggcc 24055744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0696 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0696
Description:

Target: scaffold0696; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 4566 - 4446
Alignment:
Q  206 ctgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgc 305  Q
    ||||||||||| | |||||||| ||||| ||||||||||| ||||||||  ||||  | |||||||| |||||| ||||||   ||||| ||||||||||    
T  4566 ctgcttactcccgagggttagacttctgcaaaattaaccttcatggtcgactggttctgaacaaaggagacaaaccctatgtgtccaaagacatcactgc 4467  T
Q  306 caaacttcagaaattatggaa 326  Q
    |||  | ||||| ||||||||    
T  4466 caagttacagaagttatggaa 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 22393302 - 22393166
Alignment:
Q  205 actgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactg 304  Q
    |||||||||||| | ||||| |||| |||||||  |||||| |  ||||| |||||| | |||||||| |||||| |||||||||||||| | ||||| |    
T  22393302 actgcttactcccgagggttggattactgtaaagctaaccttcgaggtcgattggtactgaacaaaggggacaaaccctatgcaaccaaagatatcaccg 22393203  T
Q  305 ccaaacttcagaaattatggaaagtctaaggaccatg 341  Q
    ||||| | ||  |||||||||||  | ||||||||||    
T  22393202 ccaaattacatcaattatggaaaaccaaaggaccatg 22393166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 8687261 - 8687141
Alignment:
Q  206 ctgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgc 305  Q
    ||||||||||| | |||||||| ||||| ||||||||||| ||||||||  ||||  | |||||||| |||||| ||||||   ||||| ||||||||||    
T  8687261 ctgcttactcccgagggttagacttctgcaaaattaaccttcatggtcgactggttctgaacaaaggagacaaaccctatgtgtccaaagacatcactgc 8687162  T
Q  306 caaacttcagaaattatggaa 326  Q
    |||  | ||||| ||||||||    
T  8687161 caagttacagaagttatggaa 8687141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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