View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862-Insertion-1 (Length: 1080)
Name: NF4862-Insertion-1
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 500 - 864
Target Start/End: Complemental strand, 30958247 - 30957883
Alignment:
| Q |
500 |
cataacaaagaattgcaatgtgttttccccccgcacggtaagacgactctcgtcgtaaactttgctccatcagttagccaccgtccgccgaccaaaactc |
599 |
Q |
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| T |
30958247 |
cataacaaagaattgcaatgtgttttccccccgcacggtaaaacgactctcgtcgtaaactttgctccatcagttagccaccttccgccgaccaaaactc |
30958148 |
T |
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| Q |
600 |
aaccgtccaccgattttccaaactcaacaacctcttttcatggacatcatcgccggagctccgtcaccaatccactccgttccgccgcgtcttccgttgt |
699 |
Q |
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| T |
30958147 |
aaccggccaccgattttccaaactcaacaaccgcttttcatggacatcatcgccggagctccgtcaccaatccactccgttccgccgcgtcttccgttgt |
30958048 |
T |
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| Q |
700 |
catcgccgtactccggccgcgaagactgctggaccgaagacgcaacttccaccctcatcgacgcctggggtgaacgctacctcgacctcaaccgcggaaa |
799 |
Q |
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| T |
30958047 |
catcgccgtactccggccgcgaagactgctggaccgaagacgcaacttccaccctcatcgacgcctggggtgaacgctacctcgacctcaaccgcggtaa |
30957948 |
T |
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| Q |
800 |
cctccgtcagaaaacttggcaagaggtcgccgacgccgtcaacgacgtccacgccgccggtaaca |
864 |
Q |
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| T |
30957947 |
cctccgtcagaaaacttggcaagaggtcgccgacgccgtcaacgacttccacgccgccggtaaca |
30957883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 30958754 - 30958321
Alignment:
| Q |
8 |
agtatctatgtggtgttttagactaagggctcaaagtccttaattgtattttgtaaaagattttatgccattgaaacattactcccaatacctaaaagga |
107 |
Q |
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| T |
30958754 |
agtatctatgtggtgttttagactaagggctcaaagtccttaattgtattttgtaaaagattttataccattgaaacattactcctaatacctaaaaaaa |
30958655 |
T |
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| Q |
108 |
acattacttcttctaccttttatgaatacatatttatagtatttaagttttaannnnnnnnagacattttcgctaattctgcacttttttacatataata |
207 |
Q |
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| T |
30958654 |
acattacttcttataccttttatgaatacatatttatagtatttaagttttaattttttttagacattttcgttaattctgcactttttgacatataata |
30958555 |
T |
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| Q |
208 |
tcacgaattttttaccacggataaaaatgacaatcaaattatttcattacatacatacgttattgtggacattaagaacaagcacaattggacttgatat |
307 |
Q |
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| T |
30958554 |
tcacgaattttttaccacggataaaaatgacaatcaaattatttcattacatacatacgttattgtggacattaagaacaagcacaattggacttgatat |
30958455 |
T |
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| Q |
308 |
gagtctcaacattcaatgacactgtaaactagtacaattagtgaatgtatgacatggttgca-----------------taatttatttcagaggtgcaa |
390 |
Q |
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| T |
30958454 |
gagtctcaacattcaatgacactataaactagtacaattagtgaatgtatgacatggttgcatgagccttttttttaagtaatttatttcagaggtgcaa |
30958355 |
T |
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| Q |
391 |
aaagtaatctgcttcactatttctcaaagcccac |
424 |
Q |
| |
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||||||||| ||||||| |||||||||||||||| |
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| T |
30958354 |
aaagtaatccgcttcaccatttctcaaagcccac |
30958321 |
T |
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