View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862-Insertion-12 (Length: 143)
Name: NF4862-Insertion-12
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1719 (1 HSPs) |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 54406231 - 54406366
Alignment:
| Q |
8 |
aattacaacacgcaaagactactgttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaacataccaatatgtcagaaag |
107 |
Q |
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| T |
54406231 |
aattacaacacgcaaagactactgttttaatggagagagtggcagacagaagaagtgtccagcatatctatgcaacacaacataccaatatgtcagaaag |
54406330 |
T |
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| Q |
108 |
tttgaaatatgagcaaccttcaatgttcaactttaa |
143 |
Q |
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| T |
54406331 |
tttgaaatatgagcaaccttcaatgttcaactttaa |
54406366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 20600493 - 20600602
Alignment:
| Q |
29 |
ctgttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaacataccaatatgtcagaaagtttgaaatatgagcaaccttc |
128 |
Q |
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| T |
20600493 |
ctgttttaatagagagagtggcagactgaag---tgtctagcatatctatgcaactcaacatagcaatatgtcag-aagtttgaaatatgagtaaccttg |
20600588 |
T |
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| Q |
129 |
aatgttcaacttta |
142 |
Q |
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| T |
20600589 |
aatgttcaaattta |
20600602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 290 - 345
Alignment:
| Q |
86 |
aacataccaatatgtcagaaagtttgaaatatgagcaaccttcaatgttcaacttta |
142 |
Q |
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| T |
290 |
aacatagcaatatgtcagaa-gtttgaaatatgagtaaccttcaatgttcaaattta |
345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 2169 - 2272
Alignment:
| Q |
32 |
ttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaa-cataccaa-tatgtcagaaagtttgaaatatgagcaaccttca |
129 |
Q |
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| T |
2169 |
ttttaatagaaagagtggcagactgaaa---tgtctagcatatctatgcaactcaaacatagcaaatctgtcagaa-gtttgatatatgagtaaccttca |
2264 |
T |
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| Q |
130 |
atgttcaa |
137 |
Q |
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| T |
2265 |
atgttcaa |
2272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 144 - 41
Alignment:
| Q |
32 |
ttttaatggagagagtggcagactgaagaagtgtccagcatatctatgcaacacaa-cataccaa-tatgtcagaaagtttgaaatatgagcaaccttca |
129 |
Q |
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| T |
144 |
ttttaatagaaagagtggcagactgaaa---tgtctagcatatctatgcaactcaaacatagcaaatctgtcagaa-gtttgatatatgagtaaccttca |
49 |
T |
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| Q |
130 |
atgttcaa |
137 |
Q |
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| T |
48 |
atgttcaa |
41 |
T |
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