View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4862-Insertion-3 (Length: 800)

Name: NF4862-Insertion-3
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4862-Insertion-3
NF4862-Insertion-3
[»] chr7 (4 HSPs)
chr7 (8-450)||(6990544-6991001)
chr7 (486-800)||(6991148-6991467)
chr7 (667-800)||(18039144-18039277)
chr7 (342-376)||(21561697-21561731)
[»] chr8 (3 HSPs)
chr8 (268-371)||(24925332-24925438)
chr8 (325-372)||(24523880-24523927)
chr8 (275-372)||(32467817-32467917)
[»] chr5 (6 HSPs)
chr5 (317-376)||(3540776-3540835)
chr5 (283-371)||(22028640-22028731)
chr5 (268-357)||(31811995-31812087)
chr5 (321-376)||(13263500-13263555)
chr5 (339-405)||(11305578-11305644)
chr5 (321-366)||(28363407-28363452)
[»] chr2 (5 HSPs)
chr2 (276-368)||(42139310-42139405)
chr2 (324-372)||(38808988-38809036)
chr2 (274-321)||(25727140-25727187)
chr2 (336-405)||(13463368-13463437)
chr2 (272-321)||(44809969-44810018)
[»] chr4 (3 HSPs)
chr4 (274-368)||(23051720-23051817)
chr4 (266-347)||(20988892-20988976)
chr4 (326-372)||(21501595-21501641)
[»] chr3 (1 HSPs)
chr3 (278-372)||(37083774-37083871)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 6990544 - 6991001
Alignment:
Q  8 gtaataacaaattcagttttccaatgagaacttgcaacttcattgtcatcaactatgttctttataatccagtctttcgttttcaattggttaacaatgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6990544 gtaataacaaattcagttttccaatgagaacttgcaacttcattgtcatcaactatgttctttataatccagtctttcattttcaattggttaacaatgg 6990643  T
Q  108 caaagaggcaggtacaagtttttcgaactagatcaatttctttttgccctagagtttc-ttcatataacttcactttctatccaaattaagcaaaggaag 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6990644 caaagaggcaggtacaagtttttcgaaccagatcaatttctttttgcctaagagtttctttcatataacttcactttctatccaaattaagcaaaggaag 6990743  T
Q  207 aacaagtttttact---------------tttctctcacaataactaaaaattcatcacactttggtctctttaacaagacatgttttcgagcttataac 291  Q
    ||||||||||||||               ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  6990744 aacaagtttttacttttctctactttccctttctctcacaataactaaaaattcatcacactttagtctctttaacaagacatattttcgagcttataac 6990843  T
Q  292 ttatgtattataacctcatttaactaaaaacttgtttggtaacagtcactttctcacaaacttataacttatttttactagtttacaatggtgttcgata 391  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  6990844 ttatgtattataacctcatttaact-aaattttgtttggtaacagtcactttctcacaaacttataacttatttttactaatttacaatgatgttggata 6990942  T
Q  392 aattaattgaagtaacnnnnnnnnnnnnnatctaaattttatgcttgcaatcttaattg 450  Q
    ||||||||||||||||             ||||||||||||||||||||||||||||||    
T  6990943 aattaattgaagtaacattttcattttttatctaaattttatgcttgcaatcttaattg 6991001  T

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Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 486 - 800
Target Start/End: Original strand, 6991148 - 6991467
Alignment:
Q  486 taatgtcaagaccaatgtattggctcgaaaccctatttatctaacacagtac-----ccaaatgtcttatgcgaaaagttatcaaaagattgactgaacg 580  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||| |||     |||||||||||||||||||||||||||||||||||||||||||    
T  6991148 taatgtcaagaccaatgtattgggtcgaaaccccatttatctaacacattacattacccaaatgtcttatgcgaaaagttatcaaaagattgactgaacg 6991247  T
Q  581 ttaaattataggccatgacttatcaatttaatatgtctaaggcaattaactagtgaacagtaatttcagttctcactctcctcttcggaaatggcggcga 680  Q
    ||||||||||||  | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6991248 ttaaattataggttacgactaatcaatttaatatgtctaaagcaattaactagtgaacagtaatttcagttctcactctcctcttcggaaatggcggcga 6991347  T
Q  681 gctatgtatggagaaaatatgcagattatttgtacacaaagtgggagaaaacctatctatgggacatggttgaaccttacagaagacctaaatccttcac 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6991348 gctatgtatggagaaaatatgcagattatttgtacacaaagtgggagaaaacctatctatgggacatggttgaaccttacagaagacctaaatccttcac 6991447  T
Q  781 tcctgtcgttgttacttata 800  Q
    ||||||||||| ||||||||    
T  6991448 tcctgtcgttgctacttata 6991467  T

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Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 667 - 800
Target Start/End: Original strand, 18039144 - 18039277
Alignment:
Q  667 ggaaatggcggcgagctatgtatggagaaaatatgcagattatttgtacacaaagtgggagaaaacctatctatgggacatggttgaaccttacagaaga 766  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  18039144 ggaaatggcggcgagctatgtgtggagaaaatatgcagattatttgtacacaaagtgggagaaaacctatctctgggatatggttgaaccttaccgaaga 18039243  T
Q  767 cctaaatccttcactcctgtcgttgttacttata 800  Q
    ||||||||||||||||||||||| ||||||||||    
T  18039244 cctaaatccttcactcctgtcgtagttacttata 18039277  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 21561731 - 21561697
Alignment:
Q  342 ttctcacaaacttataacttatttttactagttta 376  Q
    |||||||||||||||||||||||||||||| ||||    
T  21561731 ttctcacaaacttataacttatttttactaattta 21561697  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 24925332 - 24925438
Alignment:
Q  268 aagacatgttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcacaaacttataacttatt 364  Q
    |||||||| ||| ||| |||||| |||| | |||||| ||||||| ||||||||   |||||||| ||| ||||||||| | ||||||||||||||||||    
T  24925332 aagacatgattttgagtttataatttatatcttataaactcatttgactaaaaaaaccttgtttgataagagtcactttattacaaacttataacttatt 24925431  T
Q  365 tttacta 371  Q
    |||||||    
T  24925432 tttacta 24925438  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 24523927 - 24523880
Alignment:
Q  325 gtttggtaacagtcactttctcacaaacttataacttatttttactag 372  Q
    ||||| |||| |||||||||| |||| |||||||||||||||||||||    
T  24523927 gtttgctaaccgtcactttctaacaagcttataacttatttttactag 24523880  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 32467917 - 32467817
Alignment:
Q  275 gttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcacaaacttataacttatttttacta 371  Q
    ||||| ||||||||| ||||||| |||||| ||||||| ||||||||   | || |||||||| ||||||| |||   | |||||| |||||||||||||    
T  32467917 gtttttgagcttatagcttatgtcttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttacta 32467818  T
Q  372 g 372  Q
    |    
T  32467817 g 32467817  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 3540835 - 3540776
Alignment:
Q  317 aaaaacttgtttggtaacagtcactttctcacaaacttataacttatttttactagttta 376  Q
    |||||||||||||||||| | |||||| |||| ||||||||| |||||||||||||||||    
T  3540835 aaaaacttgtttggtaaccgccactttatcacgaacttataatttatttttactagttta 3540776  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 283 - 371
Target Start/End: Original strand, 22028640 - 22028731
Alignment:
Q  283 gcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcacaaacttataacttatttttacta 371  Q
    ||||||| ||| ||| |||||| ||||||| ||||||||   |  |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  22028640 gcttatagcttttgtcttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttatttttacta 22028731  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 31811995 - 31812087
Alignment:
Q  268 aagacatgttttcgagcttataacttatgtattataacctcatttaactaaaa---acttgtttggtaacagtcactttctcacaaacttata 357  Q
    ||||||||||||  |||||||| ||||||| |||||| ||||||| |||||||   ||  ||||||||||  ||||||| |||||||||||||    
T  31811995 aagacatgttttttagcttatagcttatgtcttataagctcatttgactaaaacagacccgtttggtaaccttcactttatcacaaacttata 31812087  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 13263555 - 13263500
Alignment:
Q  321 acttgtttggtaacagtcactttctcacaaacttataacttatttttactagttta 376  Q
    ||||||||||||||| ||| |||||||||| ||||||| ||| |||||||| ||||    
T  13263555 acttgtttggtaacaatcattttctcacaagcttataatttacttttactaattta 13263500  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 11305644 - 11305578
Alignment:
Q  339 actttctcacaaacttataacttatttttactagtttacaatggtgttcgataaattaattgaagta 405  Q
    |||||||||| |||||||| ||||||||||||  |||| |||||| || ||||| |||||| |||||    
T  11305644 actttctcacgaacttatatcttatttttacttatttataatggtttttgataagttaattcaagta 11305578  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 28363407 - 28363452
Alignment:
Q  321 acttgtttggtaacagtcactttctcacaaacttataacttatttt 366  Q
    |||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  28363407 acttgtttggcaaccgtcactttctcacaagcttatagcttatttt 28363452  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 42139310 - 42139405
Alignment:
Q  276 ttttcgagcttataacttatgtattataacctcatttaactaaaaact---tgtttggtaacagtcactttctcacaaacttataacttattttta 368  Q
    |||| ||||||| | ||||||| |||||| ||||||| |||||||| |   ||||||||||  ||||||||||||||| |||||| ||||||||||    
T  42139310 tttttgagcttaaagcttatgtcttataagctcatttgactaaaaaatacatgtttggtaattgtcactttctcacaagcttatagcttattttta 42139405  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 38809036 - 38808988
Alignment:
Q  324 tgtttggtaacagtcactttctcacaaacttataacttatttttactag 372  Q
    ||||||||||| ||||||||||||||| |||||| |||| |||||||||    
T  38809036 tgtttggtaactgtcactttctcacaagcttatagcttaattttactag 38808988  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 25727187 - 25727140
Alignment:
Q  274 tgttttcgagcttataacttatgtattataacctcatttaactaaaaa 321  Q
    |||||| ||||||||||||||||| |||||| ||||||| ||||||||    
T  25727187 tgtttttgagcttataacttatgttttataagctcatttgactaaaaa 25727140  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 13463368 - 13463437
Alignment:
Q  336 gtcactttctcacaaacttataacttatttttactagtttacaatggtgttcgataaattaattgaagta 405  Q
    |||||||||||||||||||||| |||||| ||||||  ||| | || |||| |||||| ||||| |||||    
T  13463368 gtcactttctcacaaacttatagcttattcttactatcttatagtgttgtttgataaactaattcaagta 13463437  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 44810018 - 44809969
Alignment:
Q  272 catgttttcgagcttataacttatgtattataacctcatttaactaaaaa 321  Q
    |||||||||||||||||| | ||||| |||||| ||||||| ||||||||    
T  44810018 catgttttcgagcttatagcctatgtcttataagctcatttgactaaaaa 44809969  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 23051817 - 23051720
Alignment:
Q  274 tgttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcacaaacttataacttattttta 368  Q
    |||||| |||||||||  |||||| |||||| | ||||| ||||||||   | ||||||||||||||||||||||||| | |||| | ||||||||||    
T  23051817 tgtttttgagcttatagtttatgtcttataagcccatttgactaaaaaggacctgtttggtaacagtcactttctcacgagcttacagcttattttta 23051720  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 20988976 - 20988892
Alignment:
Q  266 acaagacatgttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctca 347  Q
    |||||||| ||| | | ||||||||||||||| |||||| ||||||| ||||||||   |  |||||||||| ||||||||||||    
T  20988976 acaagacacgttcttgcgcttataacttatgtcttataagctcatttgactaaaaaagacacgtttggtaaccgtcactttctca 20988892  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 21501595 - 21501641
Alignment:
Q  326 tttggtaacagtcactttctcacaaacttataacttatttttactag 372  Q
    ||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  21501595 tttggtaactgtcactttctcacgagcttatagcttatttttactag 21501641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 278 - 372
Target Start/End: Original strand, 37083774 - 37083871
Alignment:
Q  278 ttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcacaaacttataacttatttttactag 372  Q
    |||||||||||| ||||||| |||||| ||||||| | ||||||   |  ||| |||||| ||||||||||||| | |||||| ||||||||||||||    
T  37083774 ttcgagcttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactag 37083871  T

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