View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862-Insertion-4 (Length: 783)
Name: NF4862-Insertion-4
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862-Insertion-4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 122 - 783
Target Start/End: Complemental strand, 14178038 - 14177377
Alignment:
| Q |
122 |
caacatctaacgaaataaatcaattataaatgatatttttaacaaaaaataatacctccataattatattacaatctaaatcatttatgcagagctacaa |
221 |
Q |
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| T |
14178038 |
caacatctaacaaaataaatcatttataaatgatatttttaacaaaaaataatacctccataattatattacaatctaaatcatttatgcagagctacaa |
14177939 |
T |
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| Q |
222 |
tattttagtacacatttatgaaagtcagacaaagatcaagcacaacacaatgttcatactttgtatcagtttgttcccaaaatatctactgggtatgagt |
321 |
Q |
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| T |
14177938 |
tattttagtacacatttatgaaagtcaaacaaagatcaagcacaacacaatgttcatactttgtatcagtttgttcccaaaatatctactgggtatgagt |
14177839 |
T |
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| Q |
322 |
gaatagtgtctctccacgcagtggtggtatcaggcttcacgtcacctaaacacttccacactgcactgttacacttgaatccacttccaaaggcaatttg |
421 |
Q |
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| T |
14177838 |
gaatagtgtctctccacgcagtggtggtatcaggcttcacgtcacctaaacatttccacactgcactgttacacttgaatccacttccaaaggcaatttg |
14177739 |
T |
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| Q |
422 |
ccacaccctatctccacatttcatcctcccttttgcttcaatatatgacaactcataccaaattgaagaagatgaagtgtttccaaatctgtacagagtc |
521 |
Q |
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| T |
14177738 |
ccacaccctatctccacatttcatcctcccttttgcttcaatgtatgacaactcataccaaattgaagaagatgaagtgtttccaaatctgtacagagtc |
14177639 |
T |
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| Q |
522 |
atttttgatggctcaacatcctctctccttagcttcaaatttttctcaatggcttgtataacagctcttcctcctgaatgtatgcagaaatgctcaaaag |
621 |
Q |
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| T |
14177638 |
atttttgatggttcaacatcctctctccttagcttcaaatttttctcaatggcttgtataacagctcttcctcctgaatgtatgcagaaatgctcaaaag |
14177539 |
T |
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| Q |
622 |
ccctattgaatttcggagtatatatgcttgttcttcttcttctactccaaagtttgtgataaataattgaaacgacatataggaattgctccctccatgg |
721 |
Q |
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| T |
14177538 |
ccctattgaatttcggagtatatatgcttgttcttcttcttctactccaaagtttgtgataaataattgaaacgacatataagaattgctccctccatgg |
14177439 |
T |
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| Q |
722 |
taaaaccaatggtcccaatgaagcaatatttttcttcaacacatctccacagacattgacta |
783 |
Q |
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| T |
14177438 |
taaaaccaatggtcccaatgaagcaatatttttcttcaacacatctccacaaacattgacta |
14177377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 14178152 - 14178090
Alignment:
| Q |
8 |
actcctttcactcgccctactaaatttcaaaaatatcttcgtttgaattatataatctgaatt |
70 |
Q |
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| T |
14178152 |
actcctttcatccgccctactaaattccaaaaatatcttcgtttgaattatataatccgaatt |
14178090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 794377 - 794325
Alignment:
| Q |
372 |
cacttccacactgcactgttacacttgaatccacttccaaaggcaatttgcca |
424 |
Q |
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| T |
794377 |
cacttccagacagcactgttacacttgaaaccacttccaaagccaatttgcca |
794325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 23271370 - 23271461
Alignment:
| Q |
375 |
ttccacactgcactgttacacttgaatccacttccaaaggcaatttgccacaccctatctccacatttcatcctcccttttgcttcaatata |
466 |
Q |
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| T |
23271370 |
ttccacacagcactattgcatttaaatccacttccaaaagctatttgccatactctatcacctctcttcatccttccttttgattcaatata |
23271461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 374 - 404
Target Start/End: Complemental strand, 46572910 - 46572880
Alignment:
| Q |
374 |
cttccacactgcactgttacacttgaatcca |
404 |
Q |
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| T |
46572910 |
cttccacactgcactgttacacttgaatcca |
46572880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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