View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4862-Insertion-5 (Length: 685)
Name: NF4862-Insertion-5
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862-Insertion-5 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0184 (3 HSPs) |
| | |
|
| [»] scaffold0078 (6 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 7 - 685
Target Start/End: Complemental strand, 5906542 - 5905864
Alignment:
| Q |
7 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5906542 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaa |
5906443 |
T |
|
| Q |
107 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcatta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906442 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcatta |
5906343 |
T |
|
| Q |
207 |
actcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906342 |
actcttggcctcactcccacctttaggccctcactcagcacaaatgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgca |
5906243 |
T |
|
| Q |
307 |
tcgcgctctcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataac |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906242 |
tcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataac |
5906143 |
T |
|
| Q |
407 |
cattccttgctccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctgaacta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5906142 |
cattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacatgctgaacta |
5906043 |
T |
|
| Q |
507 |
cttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
5906042 |
cttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaa |
5905943 |
T |
|
| Q |
607 |
aagaaacattcaaaactgaacaaggctgctgtttatctaaccatgtcaaacactccataccattgctacttttatcaga |
685 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5905942 |
aagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactccataccattgctacttttatcaga |
5905864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 670
Target Start/End: Complemental strand, 5903058 - 5902395
Alignment:
| Q |
7 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaa |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||| || |
|
|
| T |
5903058 |
agttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaa |
5902959 |
T |
|
| Q |
107 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcatta |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||| ||| || |||||| ||||||||||| |||||| |
|
|
| T |
5902958 |
ttccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcatta |
5902859 |
T |
|
| Q |
207 |
actcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgca |
306 |
Q |
| |
|
|| |||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5902858 |
acccttggcctcagtcccactttaaggccctcactcagcacaactgcattcattctttgctcaccaaacaaaggccatgtgattagtggcacaccatgca |
5902759 |
T |
|
| Q |
307 |
tcgcgctctcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataac |
406 |
Q |
| |
|
|| | |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5902758 |
tcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagtgtttcaatctgaggtgcccatgatggaataac |
5902659 |
T |
|
| Q |
407 |
cattccttgctccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctgaacta |
506 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5902658 |
catcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagatatgcaccactggctgaacta |
5902559 |
T |
|
| Q |
507 |
cttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5902558 |
cttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaa |
5902459 |
T |
|
| Q |
607 |
aagaaacattcaaaactgaacaaggctgctgtttatctaaccatgtcaaacactccataccatt |
670 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5902458 |
aagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactccataccatt |
5902395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 15 - 670
Target Start/End: Original strand, 2011150 - 2011808
Alignment:
| Q |
15 |
tgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttca |
114 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
2011150 |
tgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaattccttca |
2011249 |
T |
|
| Q |
115 |
tattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttgg |
214 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||| | |||||| ||||| |||||||| ||||||||||| |
|
|
| T |
2011250 |
tattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaactcttgg |
2011349 |
T |
|
| Q |
215 |
cctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctc |
314 |
Q |
| |
|
||||| |||||| || ||||||||| ||| || |||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||| | | | || |
|
|
| T |
2011350 |
cctcagtcccactttaaggccctcagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcaccccatgaaccacactt |
2011449 |
T |
|
| Q |
315 |
tcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattcctt |
414 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||| || |||||||| | ||||||||||||| |||||||||||||||||||| ||| || | |||| |
|
|
| T |
2011450 |
tcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaacctt |
2011549 |
T |
|
| Q |
415 |
gctccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctga---actacttgg |
511 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| || || ||||||||| |||||||||||||||||||| || | | ||| ||||||||| |
|
|
| T |
2011550 |
cctctttggttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttgg |
2011649 |
T |
|
| Q |
512 |
tgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaa |
611 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||||||||| | ||| |||||| |||||||||| |||||||||| ||||||||| || ||||| |
|
|
| T |
2011650 |
tgctcgcacaacccataggaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagac |
2011749 |
T |
|
| Q |
612 |
acattcaaaactgaacaaggctgctgtttatctaaccatgtcaaacactccataccatt |
670 |
Q |
| |
|
|||| |||||||||||||| || ||||| |||||||||| || |||||||| |||||| |
|
|
| T |
2011750 |
acatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
2011808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 28 - 661
Target Start/End: Complemental strand, 1963861 - 1963231
Alignment:
| Q |
28 |
tccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcatattattgcgcaa |
127 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||| ||| ||||||||||| || || || |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
1963861 |
tccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgcag |
1963762 |
T |
|
| Q |
128 |
tttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacc |
227 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| || | || |||| |||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
1963761 |
tttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccact |
1963662 |
T |
|
| Q |
228 |
tttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaat |
327 |
Q |
| |
|
|||||||| |||| |||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| || | | ||||||||| |||||| |
|
|
| T |
1963661 |
tttaggccttcacagagcaaaactgcatttgttctctgctcagcatacagaggccaagtgattagtggcacaccatacaccacactctcaagggttgaat |
1963562 |
T |
|
| Q |
328 |
tccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttct |
427 |
Q |
| |
|
|||||||||||||| ||| || ||||||| || ||||||||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
1963561 |
tccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttct |
1963462 |
T |
|
| Q |
428 |
ctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctgaactacttggtgctcttacaacccat |
527 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||| |||||||||||||||| || | |||| ||||||||| ||||||||||||||| |
|
|
| T |
1963461 |
ctccaaaaacccagatggtaaaaactgtaaaggatcaacatc---agatgctgaaagatatgcagcatttgctgtactacttggagctcttacaacccat |
1963365 |
T |
|
| Q |
528 |
aagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaac |
627 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
1963364 |
aagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaac |
1963265 |
T |
|
| Q |
628 |
aaggctgctgtttatctaaccatgtcaaacactc |
661 |
Q |
| |
|
|||| ||||| || |||||||||| |||||| |
|
|
| T |
1963264 |
aaggacattgtttgtccaaccatgtcagacactc |
1963231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 7 - 663
Target Start/End: Complemental strand, 1969494 - 1968829
Alignment:
| Q |
7 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaa |
106 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||| |||||||| ||| ||| ||||||| ||||||||||||| |||||| | ||| |||||||| || |
|
|
| T |
1969494 |
agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa |
1969395 |
T |
|
| Q |
107 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcatta |
206 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
1969394 |
ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta |
1969295 |
T |
|
| Q |
207 |
actcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgca |
306 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1969294 |
actcttggcctcagtcccacttttaggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgca |
1969195 |
T |
|
| Q |
307 |
tcgcgctctcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataac |
406 |
Q |
| |
|
| | ||||||||| |||||||||| ||||||||| ||||||||||||||| ||| ||||||| ||||||| |||||| || |||||||||| |||||| |
|
|
| T |
1969194 |
acacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataac |
1969095 |
T |
|
| Q |
407 |
cattccttgctccttggttctctccaagaaccc------agatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggct |
500 |
Q |
| |
|
| |||| |||||||||||||||||||||||| |||||||||||||||| || |||| ||| |||| ||||||||||||| | |||| | | |
|
|
| T |
1969094 |
aaaacctttctccttggttctctccaagaacccagatccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagat |
1968995 |
T |
|
| Q |
501 |
gaa---ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccac |
597 |
Q |
| |
|
||| ||||| ||||||| | |||||| ||||||| | |||||||||||||||||| | ||| ||||| |||||||||| |||||||||| ||||| |
|
|
| T |
1968994 |
gaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccac |
1968895 |
T |
|
| Q |
598 |
cacttccaaaagaaacattcaaaactgaacaaggctgctgtttatctaaccatgtcaaacactcca |
663 |
Q |
| |
|
|||| || ||||| |||| ||||||||| ||||||||||||||||| ||||| | || |||||||| |
|
|
| T |
1968894 |
cactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactcca |
1968829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 652
Target Start/End: Original strand, 2004148 - 2004795
Alignment:
| Q |
8 |
gttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaat |
107 |
Q |
| |
|
|||||| | ||| |||||| |||||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||| ||||| | ||| | |||||| ||| |
|
|
| T |
2004148 |
gttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattcttttaat |
2004247 |
T |
|
| Q |
108 |
tccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaa |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
2004248 |
tccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattttcattaa |
2004347 |
T |
|
| Q |
208 |
ctcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcat |
307 |
Q |
| |
|
| |||| ||||| |||||| ||||| || ||||||| || ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2004348 |
cacttgccctcaatcccacttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccatgttattagtggcacaccatgcac |
2004447 |
T |
|
| Q |
308 |
cgcgctctcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataacc |
407 |
Q |
| |
|
| | ||||| ||| |||||||||| ||||||||| ||||||| || || ||||| ||||||| ||||||| |||||| || ||||||||| ||| || |
|
|
| T |
2004448 |
cacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatttgaatctgcggcacccatgatgtaatgaca |
2004547 |
T |
|
| Q |
408 |
attccttgctccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctga---ac |
504 |
Q |
| |
|
| |||| |||||||||||||||||||||||| ||||| ||||||||| || ||| |||| ||||||||||||| |||| | |||| | ||| || |
|
|
| T |
2004548 |
aaacctttctccttggttctctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtgctgaaaaatatcctgcactagatgaactac |
2004647 |
T |
|
| Q |
505 |
tacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcc |
604 |
Q |
| |
|
|||||||||||| | |||||| |||||| | | |||||||||||||||||| | ||| |||||| ||||||||||||||||||||| ||| ||||| || |
|
|
| T |
2004648 |
tacttggtgctcgcaaaacccacaagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactccc |
2004747 |
T |
|
| Q |
605 |
aaaagaaacattcaaaactgaacaaggctgctgtttatctaaccatgt |
652 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2004748 |
aaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgt |
2004795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 670
Target Start/End: Complemental strand, 1965552 - 1964886
Alignment:
| Q |
7 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaa |
106 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||||||||| | ||||||| ||||||| |||||||||||||||||||| | ||| || |||| || |
|
|
| T |
1965552 |
agttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaa |
1965453 |
T |
|
| Q |
107 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcatta |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| | |||||| ||||| || ||||| ||| |
|
|
| T |
1965452 |
ctccttcatattattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgtta |
1965353 |
T |
|
| Q |
207 |
actcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgca |
306 |
Q |
| |
|
|||||||| |||| |||||| || |||||| || ||| || |||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
1965352 |
actcttggtctcagtcccactttaaggcccccagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcactccatgca |
1965253 |
T |
|
| Q |
307 |
tcgcgctctcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataac |
406 |
Q |
| |
|
| | || |||||| |||| ||||||||||| ||||||||||| || |||| ||| | ||||||||||||| |||||||||||||||||||| ||| || |
|
|
| T |
1965252 |
ccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgac |
1965153 |
T |
|
| Q |
407 |
cattccttgctccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctga---a |
503 |
Q |
| |
|
| |||| |||||| ||||||||||| ||||||||||||||||| | | || | ||| | || |||||||||||||||||||| |||| | ||| | |
|
|
| T |
1965152 |
aaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtgctgaaagatatgctgcactagatgaacta |
1965053 |
T |
|
| Q |
504 |
ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttc |
603 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||||||||| || || | ||| |||| | |||||||||| |||||||||| ||||||||| | |
|
|
| T |
1965052 |
ctacttggtgctcacacaacccataggaatttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcc |
1964953 |
T |
|
| Q |
604 |
caaaagaaacattcaaaactgaacaaggctgctgtttatctaaccatgtcaaacactccataccatt |
670 |
Q |
| |
|
| ||||| |||| |||||||||||||| || ||||| |||||||||| || |||||||| |||||| |
|
|
| T |
1964952 |
cgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
1964886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 660
Target Start/End: Original strand, 2017941 - 2018580
Alignment:
| Q |
18 |
accaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcatat |
117 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| || |||| ||||| ||||| ||||| || |||| | |||||| ||||||||||||| |
|
|
| T |
2017941 |
accaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaattccttcatat |
2018040 |
T |
|
| Q |
118 |
tattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcct |
217 |
Q |
| |
|
| ||||||| |||| ||| ||||||||||||||||||||||||||| | || || | || | |||||||||||||||| | ||||| | ||||||| |
|
|
| T |
2018041 |
ttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaatttttggcct |
2018140 |
T |
|
| Q |
218 |
cactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctca |
317 |
Q |
| |
|
|| |||||| ||||| || ||||||| || ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
2018141 |
cagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctca |
2018240 |
T |
|
| Q |
318 |
aggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgct |
417 |
Q |
| |
|
|| |||||||||||||||| ||| ||||||| ||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
2018241 |
agcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaataaccatcccttgtt |
2018340 |
T |
|
| Q |
418 |
ccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctgaactacttggtgctct |
517 |
Q |
| |
|
|||| |||||||||||||||| || |||||||| || || | |||||||| |||||||||||||||| || |||||| | ||||||||| ||| |
|
|
| T |
2018341 |
ccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaacatc---agatgctgaaagatatgcagcattggctgtattacttggtgatct |
2018437 |
T |
|
| Q |
518 |
tacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| ||||||| |||||||| ||||||||||||| | |
|
|
| T |
2018438 |
tacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatac |
2018537 |
T |
|
| Q |
618 |
aaaactgaacaaggctgctgtttatctaaccatgtcaaacact |
660 |
Q |
| |
|
||||||||||||| |||||||| || ||||||| || ||||| |
|
|
| T |
2018538 |
aaaactgaacaagtttgctgtttgtccaaccatgccagacact |
2018580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 663
Target Start/End: Original strand, 2007537 - 2008186
Alignment:
| Q |
17 |
caccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcata |
116 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||| ||| ||| ||||||| ||||||||||||| |||||| | ||| |||||||| ||||||||||| |
|
|
| T |
2007537 |
caccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatg |
2007636 |
T |
|
| Q |
117 |
ttattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcc |
216 |
Q |
| |
|
|||||||| |||||||||| || || |||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||| || |
|
|
| T |
2007637 |
ttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccc |
2007736 |
T |
|
| Q |
217 |
tcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctc |
316 |
Q |
| |
|
||| |||||| ||||| || ||||||| || ||| ||||||||| ||||||||||||| |||||||| ||||||| |||||||| |||| | | ||||| |
|
|
| T |
2007737 |
tcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccacgtgattaacggcacaccgtgcaccacactctc |
2007836 |
T |
|
| Q |
317 |
aaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgc |
416 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||| ||||||||||| ||||||| ||||||| |||||| || |||||||||| |||||| | |||| | |
|
|
| T |
2007837 |
aagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttc |
2007936 |
T |
|
| Q |
417 |
tccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctgaa---ctacttggtg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| ||| |||| ||||||||||||| | |||| | |||| ||||| |||| |
|
|
| T |
2007937 |
tccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtg |
2008036 |
T |
|
| Q |
514 |
ctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaac |
613 |
Q |
| |
|
||| | |||||| |||||||| |||||||||||||||||| | ||||||||| ||||||| || |||||||||| ||| ||||| |||||||| || |
|
|
| T |
2008037 |
ctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatac |
2008136 |
T |
|
| Q |
614 |
attcaaaactgaacaaggctgctgtttatctaaccatgtcaaacactcca |
663 |
Q |
| |
|
|| |||||| |||||||| ||||||||||| ||||| | || |||||||| |
|
|
| T |
2008137 |
atacaaaaccgaacaaggttgctgtttatccaaccaggccagacactcca |
2008186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 40 - 651
Target Start/End: Original strand, 2014580 - 2015188
Alignment:
| Q |
40 |
ctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcatattattgcgcaatttctcacattc |
139 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||| || ||||| ||||| || |||| | |||||| |||||||||||||| ||||||| |||| ||| ||| |
|
|
| T |
2014580 |
ctaattgagaaagagtctttgtagcagacccgtcatctttatgtgcactattagcagattcttttaattccttcatatttttgcgcagtttcccaccttc |
2014679 |
T |
|
| Q |
140 |
ttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacctttaggccctca |
239 |
Q |
| |
|
|||||||||||||||||||||||| | || || | || | |||||||||||||||| | ||||| | ||||||||| |||||| ||||| || ||| |
|
|
| T |
2014680 |
ttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaatttttggcctcagtcccacttttagtccttca |
2014779 |
T |
|
| Q |
240 |
ctcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaat |
339 |
Q |
| |
|
|||| || ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||| | |
|
|
| T |
2014780 |
ctcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagt |
2014879 |
T |
|
| Q |
340 |
gactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaaccc |
439 |
Q |
| |
|
|| ||||||| ||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
2014880 |
gagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccc |
2014979 |
T |
|
| Q |
440 |
agatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccactggctgaactacttggtgctcttacaacccataagaatttatga |
539 |
Q |
| |
|
|| |||||||| || || | |||||||| |||||||||||||||| || |||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2014980 |
tgaaggtaaaaattgtaaagggtcaacatc---agatgctgaaagatatgcagcattggctgtattacttggtgatcttacaacccataagaatttatga |
2015076 |
T |
|
| Q |
540 |
ttactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtt |
639 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| |||||||||||| ||||||| |||||||| || ||||| |||| || ||||||||||||| | |||| |
|
|
| T |
2015077 |
ttactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtt |
2015176 |
T |
|
| Q |
640 |
tatctaaccatg |
651 |
Q |
| |
|
| || ||||||| |
|
|
| T |
2015177 |
tgtccaaccatg |
2015188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 588
Target Start/End: Complemental strand, 2437287 - 2436704
Alignment:
| Q |
8 |
gttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaat |
107 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| ||||||||||| ||||||| | ||||| |||||||||||||||||||||| ||| |||||||| | | |
|
|
| T |
2437287 |
gttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagt |
2437188 |
T |
|
| Q |
108 |
tccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaa |
207 |
Q |
| |
|
|| ||||||||| | | | ||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
2437187 |
tctttcatattactccac--tttag----ttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaa |
2437094 |
T |
|
| Q |
208 |
ctcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcat |
307 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||| || ||| | |||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2437093 |
ctcttggcctcagtcccacttttagtccctcactcaacaaaaccgaattcgttctctgctcggcaaaaagaggccatgtgattagtggcacaccatgcac |
2436994 |
T |
|
| Q |
308 |
cgcgctctcaaggattgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataacc |
407 |
Q |
| |
|
| | ||||||||| |||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
2436993 |
cacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtggtgcccatgatggaataacc |
2436894 |
T |
|
| Q |
408 |
attccttgctccttggttctctccaagaacccagatggtaaaaactgcgaaagatcaacatcgttttgtgctgaaa--ga----tatgcaccactggctg |
501 |
Q |
| |
|
|| ||||| |||||||||||||| | ||||||| |||||||||| ||| || | |||||||| ||||||||||||| || ||||| |||| | || |
|
|
| T |
2436893 |
atcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtgctgaaactgaaaagtatgctgcactagatg |
2436794 |
T |
|
| Q |
502 |
aactac---ttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaa |
588 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
2436793 |
aactactatttggtgctcttacaacccataagaatttctgattactcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 612
Target Start/End: Original strand, 560656 - 560747
Alignment:
| Q |
521 |
aacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaa |
612 |
Q |
| |
|
||||||||| |||||||| || || | |||||| || | || ||||||| |||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
560656 |
aacccataaaaatttatggttgctaagttccaatcccaaggcaagctcattaatttggtcttgtgaaagtgtgcccccacttccaaaagaaa |
560747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 329 - 449
Target Start/End: Complemental strand, 906140 - 906020
Alignment:
| Q |
329 |
ccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctc |
428 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||| |||| ||| || |||| || |||||||||||||||| ||||| ||| | || ||| |||| |
|
|
| T |
906140 |
ccaaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctt |
906041 |
T |
|
| Q |
429 |
tccaagaacccagatggtaaa |
449 |
Q |
| |
|
|||||||| ||| ||||||| |
|
|
| T |
906040 |
tccaagaaaccatttggtaaa |
906020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 622
Target Start/End: Original strand, 15380 - 15496
Alignment:
| Q |
506 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcca |
605 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
15380 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
15479 |
T |
|
| Q |
606 |
aaagaaacattcaaaac |
622 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
15480 |
aaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 614
Target Start/End: Original strand, 11840 - 11940
Alignment:
| Q |
514 |
ctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaac |
613 |
Q |
| |
|
|||||| ||||||||| || || ||| ||| |||||||| |||| ||||| ||||| || ||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
11840 |
ctcttaaaacccataaaaacttttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaac |
11939 |
T |
|
| Q |
614 |
a |
614 |
Q |
| |
|
| |
|
|
| T |
11940 |
a |
11940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 15200 - 15276
Alignment:
| Q |
323 |
tgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatg |
399 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| | || |||| ||||||| |||||||||||||||| |
|
|
| T |
15200 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
15276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 622
Target Start/End: Complemental strand, 2921 - 2805
Alignment:
| Q |
506 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcca |
605 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| || ||| ||||||||||| |||||||||||| |
|
|
| T |
2921 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttcca |
2822 |
T |
|
| Q |
606 |
aaagaaacattcaaaac |
622 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
2821 |
aaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 626
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
| Q |
542 |
actcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaa |
626 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
22139 |
actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 622
Target Start/End: Complemental strand, 57464 - 57348
Alignment:
| Q |
506 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcca |
605 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
57464 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
57365 |
T |
|
| Q |
606 |
aaagaaacattcaaaac |
622 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
57364 |
aaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 57644 - 57568
Alignment:
| Q |
323 |
tgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatg |
399 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| | || |||| ||||||| |||||||||||||||| |
|
|
| T |
57644 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
57568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 614
Target Start/End: Complemental strand, 61004 - 60904
Alignment:
| Q |
514 |
ctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaac |
613 |
Q |
| |
|
|||||| ||||||||| || || ||| ||| |||||||| |||| ||||| ||||| || ||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
61004 |
ctcttaaaacccataaaaacttttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaac |
60905 |
T |
|
| Q |
614 |
a |
614 |
Q |
| |
|
| |
|
|
| T |
60904 |
a |
60904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 3100 - 3024
Alignment:
| Q |
324 |
gaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg |
400 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | || | || ||||||| ||||||||||||||||| |
|
|
| T |
3100 |
gaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg |
3024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 5890603 - 5890670
Alignment:
| Q |
23 |
atttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattag |
90 |
Q |
| |
|
|||| |||||||| ||||||||||||||| | | ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5890603 |
atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattag |
5890670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 622
Target Start/End: Complemental strand, 16566542 - 16566461
Alignment:
| Q |
541 |
tactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac |
622 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||| ||| ||| ||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
16566542 |
tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac |
16566461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 622
Target Start/End: Original strand, 16599120 - 16599201
Alignment:
| Q |
541 |
tactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac |
622 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||| ||| ||| ||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
16599120 |
tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac |
16599201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 16566756 - 16566680
Alignment:
| Q |
324 |
gaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg |
400 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | || | || ||||||| ||||||||||||||||| |
|
|
| T |
16566756 |
gaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg |
16566680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 16598906 - 16598982
Alignment:
| Q |
324 |
gaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg |
400 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | || | || ||||||| ||||||||||||||||| |
|
|
| T |
16598906 |
gaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg |
16598982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 3467 - 3429
Alignment:
| Q |
324 |
gaattccaaccacaatgactcaagaatccaccaactgat |
362 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3467 |
gaattccaaccacaatgagtcaagaatcccccaactgat |
3429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 35848405 - 35848443
Alignment:
| Q |
324 |
gaattccaaccacaatgactcaagaatccaccaactgat |
362 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35848405 |
gaattccaaccacaatgagtcaagaatcccccaactgat |
35848443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 35866076 - 35866114
Alignment:
| Q |
324 |
gaattccaaccacaatgactcaagaatccaccaactgat |
362 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35866076 |
gaattccaaccacaatgagtcaagaatcccccaactgat |
35866114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 610
Target Start/End: Original strand, 8294628 - 8294733
Alignment:
| Q |
505 |
tacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcc |
604 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| ||||||||| | ||||| ||||| ||| | | ||| ||||| || |||| ||||||||||| |
|
|
| T |
8294628 |
tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc |
8294727 |
T |
|
| Q |
605 |
aaaaga |
610 |
Q |
| |
|
|||||| |
|
|
| T |
8294728 |
aaaaga |
8294733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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