View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862-Insertion-9 (Length: 559)
Name: NF4862-Insertion-9
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 551
Target Start/End: Complemental strand, 27815220 - 27814678
Alignment:
| Q |
8 |
gcatccaaacatgattctaaatcaaaatgtctccaaaacatgattctaaatcagacaactgcaaacaataaaatgtcaccaaacatgattctaaatcaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
27815220 |
gcatccaaacatgattctaaatcaaaatgtctccaaaacatgattctaaatcagacaa-tgcaaacaataaaatgtctccaaacatgattctaaatcaaa |
27815122 |
T |
|
| Q |
108 |
atgagcaaatgtttataataagctccatgcattctttaacccagttttcttggactaactaatgcgaaagagaccttatctcatcatcacgccaaatatc |
207 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27815121 |
atgagcaaatgtttataataagatcaatgcattctttaacccatttttctaggactaactaatgcgaaagagaccttatctcatcatcacgccaaatatc |
27815022 |
T |
|
| Q |
208 |
ttccaaggtcccatgtggcattcttcttggatttctcgcaaacggagtcttgcaccaaaggcatgttctaatttgacaagtgataagcttgcatgggtta |
307 |
Q |
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| T |
27815021 |
ttccaaggtcccatgtggcattcttcttggatttctcgcaaatggagtcttgcaccaaaggcatgttctaatttgacaagtgataagcttgcatgagtta |
27814922 |
T |
|
| Q |
308 |
ttgacacgacttagcacatcatcaaccgagtattgttgaagttcatcatccaatttatccacaataagactatggcttaaatttaccacctccaaatgtt |
407 |
Q |
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| T |
27814921 |
ttgacacgactttgcacatcatcaaccgagtattgttgaagttcatcatccaatttatccacaataagactatggcttaaatttaccacctccaaatgtt |
27814822 |
T |
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| Q |
408 |
ccaagttattaattacatgacataaacctcccatgttaactgtcatgtttcgaatactcaaaacctttaaatttggagtgtagttaaccaatgccctagc |
507 |
Q |
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| T |
27814821 |
ccaagttattaagtacatgacataaacctcccatgttaactgtcatgtttcgaatactcaaaacctttaaatttggagtgtagttaaccaatgccctagc |
27814722 |
T |
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| Q |
508 |
ttcatattgttcaaaacgacatgtgatctttaagctaatgatgt |
551 |
Q |
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| T |
27814721 |
ttcatattgttcaaaacgacatgtgatctttaagctaatgatgt |
27814678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 60 - 559
Target Start/End: Complemental strand, 27807430 - 27806931
Alignment:
| Q |
60 |
agacaactgcaaacaataaaatgtcaccaaacatgattctaaatcaaaatgagcaaatgtttataataagctccatgcattctttaacccagttttcttg |
159 |
Q |
| |
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|||||| ||||| ||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||| || ||| || |
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| T |
27807430 |
agacaaatgcaagcaatagaatgtctccaaacatgattctaattcaaaatgagaaaatgtttataataagatccatgcaatctttaacacattttactat |
27807331 |
T |
|
| Q |
160 |
gactaactaatgcgaaagagaccttatctcatcatcacgccaaatatcttccaaggtcccatgtggcattcttcttggatttctcgcaaacggagtcttg |
259 |
Q |
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| T |
27807330 |
gactaactaatgtgaaagagagcttatctcatcttcacgccaaatattttccaaggatccatgtggcattcttcttggatttctcgcaaatggattcttg |
27807231 |
T |
|
| Q |
260 |
caccaaaggcatgttctaatttgacaagtgataagcttgcatgggttattgacacgacttagcacatcatcaaccgagtattgttgaagttcatcatcca |
359 |
Q |
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|||| | ||| |||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||| || | |||| |
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| T |
27807230 |
cacctatggcttgttgttatttgacaagtgataagcttgcatgagatattgacacgacttagcacatcatcaatcgagtataaatgaaacgcaccgtcca |
27807131 |
T |
|
| Q |
360 |
atttatccacaataagactatggcttaaatttaccacctccaaatgttccaagttattaattacatgacataaacctcccatgttaactgtcatgtttcg |
459 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||| |
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| T |
27807130 |
ctttatccacaataagactatggcttaagtttaccacctccaaatgttccaagttattaagcacgtgacataaacctcccatgttaactttcatctttcg |
27807031 |
T |
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| Q |
460 |
aatactcaaaacctttaaatttggagtgtagttaaccaatgccctagcttcatattgttcaaaacgacatgtgatctttaagctaatgatgttcgtgcag |
559 |
Q |
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||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||| |
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| T |
27807030 |
aatactcaaaacctttagatttggagtgcatttaaccaatgccctagcttcatattgttcaaaaccacctgtgatctttaagctaacaatgttcttgcag |
27806931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 28551203 - 28551251
Alignment:
| Q |
385 |
taaatttaccacctccaaatgttccaagttattaattacatgacataaa |
433 |
Q |
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|||||||||||| ||||||||||| ||| |||||| |||| |||||||| |
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| T |
28551203 |
taaatttaccacatccaaatgttctaagctattaagtacacgacataaa |
28551251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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