View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4862_high_4 (Length: 367)
Name: NF4862_high_4
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 42818885 - 42818518
Alignment:
| Q |
6 |
attgtttccatattgaaaagctaaaattgaatagagcaactaatagacattataaattgccatatgatagtattacaacaatgtacaacaaaagtgcaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42818885 |
attgtttccatattgaaaagctaaaattgaatagagcaactaatagacattataaattgccatatgatagtattacaacaatgtacaacaaaagtgcaac |
42818786 |
T |
|
| Q |
106 |
acatatctttgcaatattcaaaagctccaattgaattttacagttcctagtaccctatgtatttgtagttcgacatagcagagtatctattgtgcaagat |
205 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42818785 |
aaatatctttgcaatattcaaaagctccaattgaattttacagttcctagtaccctatgtatttgtagttcgacatagcagagcatctattgtgcaagat |
42818686 |
T |
|
| Q |
206 |
aaagcggtatataaatatcgttggaccagaacccaaatcaaaag-caactgatcaaatgcattttcaatcacaggaagcacataaaatgatatattgcac |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42818685 |
aaagaggtatataaatatcgttggaccagaacccaaatcaaaagacaactgatcaaatgcattttcaatcacaggaagcacataaaatgatatattgcac |
42818586 |
T |
|
| Q |
305 |
ataaaatcacata---------aacaaaaacaagtttatcaattacgcaagagccaaaaatgatagaa |
363 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42818585 |
ataaaatcacataaaaaaaattaaaaaaaacaagtttatcaattacgcaagagccaaaaatgatagaa |
42818518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University