View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862_low_10 (Length: 225)
Name: NF4862_low_10
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41938279 - 41938063
Alignment:
| Q |
1 |
ctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtgg---------tggaggtgg |
91 |
Q |
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| T |
41938279 |
ctaaaattgcacccatttctgttgggtcggcaaacatgaaattcggatccaatggaaaattatgagcttgaaaatcctgtggcggcggtggtggaggtgg |
41938180 |
T |
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| Q |
92 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcata |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41938179 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaataccgagcatagtcatcaaagcccaatttttgcata |
41938080 |
T |
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| Q |
192 |
gtagctaacaaatcttc |
208 |
Q |
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||||||||||||||||| |
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| T |
41938079 |
gtagctaacaaatcttc |
41938063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41929049 - 41928833
Alignment:
| Q |
1 |
ctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtgg---------tggaggtgg |
91 |
Q |
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|
|||||||||||| ||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41929049 |
ctaaaattgcacccatttctgttgggtcggtaagcacggaatttggatccaatggaaaattatgagcttgaaaatcctgtggcggcggtggtggaggtgg |
41928950 |
T |
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| Q |
92 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcata |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41928949 |
aggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatattgagcatagtcatcaaagcccaatttttgcata |
41928850 |
T |
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| Q |
192 |
gtagctaacaaatcttc |
208 |
Q |
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||||||||||||||||| |
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| T |
41928849 |
gtagctaacaaatcttc |
41928833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41911303 - 41911093
Alignment:
| Q |
1 |
ctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtggtg---gaggtggaggtgg |
97 |
Q |
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|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||| |
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| T |
41911303 |
ctaaaattgcacccatttctgttgggtcggcaagcacgaaatttggatccaatggaaaattatgagcctgaaaatcctgtggcggcagtggtggaggtgg |
41911204 |
T |
|
| Q |
98 |
gggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttttgcatagtagct |
197 |
Q |
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|||||| ||||||| ||| ||||||| ||| | |||||||||||||||||||| |||| || ||||||| ||||||| ||||||||||||||| || | |
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| T |
41911203 |
gggagcgtattgacttacgcgagcacgatggcaaaaaagttggatgtagcggagggaacacgcagcatagacatcaaaacccaatttttgcatactaatt |
41911104 |
T |
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| Q |
198 |
aacaaatcttc |
208 |
Q |
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||||||||||| |
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| T |
41911103 |
aacaaatcttc |
41911093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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