View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862_low_2 (Length: 461)
Name: NF4862_low_2
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 40 - 452
Target Start/End: Complemental strand, 6990509 - 6990089
Alignment:
| Q |
40 |
agttttctaaagaaactttcaatcacctcaagaaattattaataacaccaagagtttctttagaggtgaagagtaactttcaaaatgatttgcttaatgt |
139 |
Q |
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| T |
6990509 |
agttttctaaagaaagtttcaaccacctcaagaaatttttaataacatcaagagtttctttagaggtgaagagtaactttcaaaattatttgcttaatgt |
6990410 |
T |
|
| Q |
140 |
tcctattcgtcggaataatctaagtgtcagcgcatgcattccgccatcggtggataattttaagcttaattgt------------tcaacagttaggtag |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
6990409 |
tcctactcgtcggaataatctaagtgtcagcgcatgcattccgccatcggtggataattttaagcttaattgtgatgcttgtggttcaacatttaggtag |
6990310 |
T |
|
| Q |
228 |
agcagcatgccgtggcatgttgtgtgatcataatggttgattcatttgtgtgttcgcatccaacttgaagttatgttcaattgcacacgcagatttttgc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6990309 |
agcagcatgccgtggcatgttgtgtgatcataatggttgattcatttgtgtgtttgcatccaacttgaagttatgttcaattgcacacgcagatttttgc |
6990210 |
T |
|
| Q |
328 |
actattttcattggtgttaaattagctttagacaagggctgccaaagaattcttgtcgagtctgactctcaagttgccgtgggtttactaaatagtggag |
427 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6990209 |
gctatttttattggtgttaaattagctttagacaagggctgccaaagaattcttgtcgagtctgactctcaagttgccgtgggtttactaaatagtggag |
6990110 |
T |
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| Q |
428 |
gcccttcttctcactcacttctctg |
452 |
Q |
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|||||||||||||||||||| |
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| T |
6990109 |
----ctcttctcactcacttctctg |
6990089 |
T |
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