View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862_low_3 (Length: 405)
Name: NF4862_low_3
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 2487017 - 2487397
Alignment:
| Q |
17 |
cttccaattgcgaaactgtaagtttttcctattttatcttttattacttttactttaaacatcatagatttgcatggtgttcttgcttgacctgatattc |
116 |
Q |
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| T |
2487017 |
cttccaattgtgaaactgtaagtttttcctattttatcttttattacttttactttaaacatcatagatttgcatggtgttcttgcttgacctgatattc |
2487116 |
T |
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| Q |
117 |
tggcttccgatgttcttttaccgttgtctctgattgcagtccttcacaaggtctacctcagagacagctttggcgcggttatctgacctatttggttcat |
216 |
Q |
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| T |
2487117 |
tggcttccgatgttcttttaccgttgtctctgattgcagtccttcacaaggtctacctcagagacagctttggcgcggttatctgacctatttggttcat |
2487216 |
T |
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| Q |
217 |
ttgcactctttccacaacgagaggagaatcaaggtacaaatcgatgagcattttctactcagggtggagaacttttacttcataataagaatattcgtcg |
316 |
Q |
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| T |
2487217 |
ttgcactctttccacaacgagaagagaatcaaggtacaaatcgatgagcattttctactcagggtggagaacttttacttcataataagaatattcgtcg |
2487316 |
T |
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| Q |
317 |
ttaatcttgcaatacatgattattcaaccttgattgggttttattaataagttttataggagaaaagttttattgatgatg |
397 |
Q |
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| T |
2487317 |
ttaatcttgcaatacatgattattcaaccttgattgggttttattaataagttttataggagaaaagttttattgatgatg |
2487397 |
T |
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