View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4862_low_6 (Length: 251)
Name: NF4862_low_6
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4862_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 26791810 - 26791590
Alignment:
| Q |
11 |
caaaggtgtgaacataaaatatgaagttagggacaacagaaatgggtacaaagctggtgcactaaaggagggaatgaaacatagccatgtcctacaatgt |
110 |
Q |
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| T |
26791810 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26791711 |
T |
|
| Q |
111 |
gaatatgttgccatctttgatgctgattttcaacctgaacccgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791710 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttc |
26791611 |
T |
|
| Q |
211 |
aagctcgctggaagtttggta |
231 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26791610 |
aagctcgctggaagtttggta |
26791590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 26822711 - 26822488
Alignment:
| Q |
11 |
caaaggtgtgaacataaaatatgaagttagggacaacagaaatgggtacaaagctggtgcactaaaggagggaatgaaacatagccatgtcctacaatgt |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26822711 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26822612 |
T |
|
| Q |
111 |
gaatatgttgccatctttgatgctgattttcaacctgaacccgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttc |
210 |
Q |
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| T |
26822611 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgactttctccgccgaacgatcccttttcttgtcaataatcctgaaattggtctcgttc |
26822512 |
T |
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| Q |
211 |
aagctcgctggaagtttggtaatt |
234 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
26822511 |
aggctcgctggaagtttggtaatt |
26822488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 26786070 - 26785847
Alignment:
| Q |
11 |
caaaggtgtgaacataaaatatgaagttagggacaacagaaatgggtacaaagctggtgcactaaaggagggaatgaaacatagccatgtcctacaatgt |
110 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26786070 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26785971 |
T |
|
| Q |
111 |
gaatatgttgccatctttgatgctgattttcaacctgaacccgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
26785970 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
26785871 |
T |
|
| Q |
211 |
aagctcgctggaagtttggtaatt |
234 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
26785870 |
aggctcgctggaagtttggtaatt |
26785847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 26832796 - 26832563
Alignment:
| Q |
3 |
tggagaagcaaaggtgtgaacataaaatatgaagttagggacaacagaaatgggtacaaagctggtgcactaaaggagggaatgaaacatagccatgtcc |
102 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||| |||| |
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| T |
26832796 |
tggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtga |
26832697 |
T |
|
| Q |
103 |
tacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacccgattttctcctccgaaccatcccttttcttgtcaataatcctgagattgg |
202 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| |
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| T |
26832696 |
aacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattgg |
26832597 |
T |
|
| Q |
203 |
tctcgttcaagctcgctggaagtttggtaatttc |
236 |
Q |
| |
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||| ||||| |||||||||||||||||||||||| |
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| T |
26832596 |
tcttgttcaggctcgctggaagtttggtaatttc |
26832563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 41546210 - 41546355
Alignment:
| Q |
3 |
tggagaagcaaaggtgtgaacataaaatatgaagttagggacaacagaaatgggtacaaagctggtgcactaaaggagggaatgaaacatagccatgtcc |
102 |
Q |
| |
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|||||||| ||||| | |||||||| ||||| | ||||| || |||||||| |||||||||||||| || || || |||||||| |||||| ||||| |
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| T |
41546210 |
tggagaagaaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtca |
41546309 |
T |
|
| Q |
103 |
tacaatgtgaatatgttgccatctttgatgctgattttcaacctga |
148 |
Q |
| |
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| T |
41546310 |
aactttgtgactatgttgccatctttgatgctgattttcaacctga |
41546355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 41917439 - 41917666
Alignment:
| Q |
8 |
aagcaaaggtgtgaacataaaatatgaagttagggacaacagaaatgggtacaaagctggtgcactaaaggagggaatgaaacatagccatgtcctacaa |
107 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||| || || |||| || |||||||| |||||| |||| ||| |
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| T |
41917439 |
aagcaaaggagtgaatataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaa |
41917538 |
T |
|
| Q |
108 |
tgtgaatatgttgccatctttgatgctgattttcaacctgaacccgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcg |
207 |
Q |
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||||| ||||||| || |||||||||||||||||||| || || |||||| | || ||| | || ||| | || |||||||||| ||||| || |
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| T |
41917539 |
tgtgatcatgttgcaatatttgatgctgattttcaaccagagcctgattttttgtggcgtaccgtaccatttatggtgcataatcctgaaattgggctta |
41917638 |
T |
|
| Q |
208 |
ttcaagctcgctggaagtttggtaattt |
235 |
Q |
| |
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|||||||||| ||||| ||||||||||| |
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|
| T |
41917639 |
ttcaagctcgttggaaatttggtaattt |
41917666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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