View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4862_low_8 (Length: 237)

Name: NF4862_low_8
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4862_low_8
NF4862_low_8
[»] chr5 (2 HSPs)
chr5 (139-230)||(476382-476473)
chr5 (1-74)||(476538-476611)
[»] scaffold0043 (2 HSPs)
scaffold0043 (139-230)||(34489-34580)
scaffold0043 (1-74)||(34351-34424)
[»] chr6 (2 HSPs)
chr6 (139-230)||(14844017-14844108)
chr6 (1-74)||(14843879-14843952)
[»] chr1 (9 HSPs)
chr1 (139-230)||(3544981-3545072)
chr1 (143-230)||(1248469-1248556)
chr1 (1-74)||(3544843-3544916)
chr1 (145-205)||(26510243-26510303)
chr1 (143-205)||(13867699-13867761)
chr1 (143-205)||(34352617-34352679)
chr1 (143-205)||(45795418-45795480)
chr1 (146-180)||(5808800-5808834)
chr1 (1-33)||(1248327-1248359)
[»] scaffold0555 (1 HSPs)
scaffold0555 (139-230)||(7837-7928)
[»] chr3 (6 HSPs)
chr3 (139-230)||(31675099-31675190)
chr3 (139-230)||(31921230-31921321)
chr3 (143-205)||(34829613-34829675)
chr3 (143-205)||(40513590-40513652)
chr3 (1-48)||(31921093-31921140)
chr3 (1-70)||(31675260-31675329)
[»] chr2 (4 HSPs)
chr2 (143-205)||(11196545-11196607)
chr2 (140-205)||(33584231-33584296)
chr2 (140-200)||(7300874-7300934)
chr2 (139-205)||(18844513-18844579)
[»] chr8 (5 HSPs)
chr8 (143-212)||(6245314-6245383)
chr8 (143-212)||(9510969-9511038)
chr8 (186-230)||(3939384-3939428)
chr8 (1-60)||(3939544-3939603)
chr8 (139-205)||(25193283-25193349)
[»] chr4 (2 HSPs)
chr4 (143-205)||(43516614-43516676)
chr4 (140-205)||(2071734-2071799)
[»] chr7 (1 HSPs)
chr7 (140-205)||(8753269-8753334)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 476473 - 476382
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  476473 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacactgatgatgt 476382  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 476611 - 476538
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacgatggcatatgtgtttgctct 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  476611 cttcgaacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacggtggcagatgtgtttgctct 476538  T

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Target: scaffold0043 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 34489 - 34580
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  34489 ttggtagaggagtgtaggcaattacttaatggtgttgttttacagtctgatatttctgacaggtggctttgggagtccaacactgatgatgt 34580  T

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Target: scaffold0043; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34351 - 34424
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacgatggcatatgtgtttgctct 74  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||    
T  34351 cttcggacaaggtttagaagtttatttcacttaacgaataacaaactatgtacggtggcagatgtgtttgctct 34424  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 14844017 - 14844108
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  14844017 ttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacactgatgatgt 14844108  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14843879 - 14843952
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacgatggcatatgtgtttgctct 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  14843879 cttcggacaaggtttagacgtttatttgacttaacgaataacaaaatgtgtacggtggcagatgtgtttgctct 14843952  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 3544981 - 3545072
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  3544981 ttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacactgatgatgt 3545072  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 1248469 - 1248556
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||  ||||| |||||||||||||||||    
T  1248469 tagaggagtgtaggcaattacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactccaacattgatgatgt 1248556  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3544843 - 3544916
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacgatggcatatgtgtttgctct 74  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||| |||||||||||||    
T  3544843 cttcggacaaggtttagacgtttatttaacttaacgaataacaaaatatgtacggtggcagatgtgtttgctct 3544916  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 26510243 - 26510303
Alignment:
Q  145 gaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  26510243 gaggagtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggc 26510303  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 13867699 - 13867761
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||||||||||||  ||| |||||||||| |||||| ||| ||||||||||||||||||||    
T  13867699 tagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 13867761  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 34352679 - 34352617
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| |||||||| |||||||||||    
T  34352679 tagaggagtgtaggcaattaactaatggtgtcgttttgcagtctgatatttatgacaggtggc 34352617  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 45795480 - 45795418
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||||||||||||  ||| |||||||||| |||||| ||| ||||||||||||||||||||    
T  45795480 tagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 45795418  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 5808834 - 5808800
Alignment:
Q  146 aggagtgtaggcaattacttaatggtgttgttttg 180  Q
    |||||||||||||||| ||||||||||||||||||    
T  5808834 aggagtgtaggcaattgcttaatggtgttgttttg 5808800  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1248327 - 1248359
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgactta 33  Q
    ||||||||||||||||| |||||||||||||||    
T  1248327 cttcggacaaggtttagtcgtttatttgactta 1248359  T

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Target: scaffold0555 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 7928 - 7837
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  7928 ttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacaataatgatgt 7837  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 31675190 - 31675099
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  31675190 ttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggctttgggagtccaacaatgatgatgt 31675099  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 31921230 - 31921321
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    |||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  31921230 ttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggctttgggagtccaacaatgatgatgt 31921321  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 34829675 - 34829613
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  34829675 tagaggagtgtaggaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggc 34829613  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 40513590 - 40513652
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||||||||||||  ||| |||||||||| |||||| ||||||||||||||||||||||||    
T  40513590 tagaggagtgtaggctgttaattaatggtgtcgttttgcagtatgatatttctgacaggtggc 40513652  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31921093 - 31921140
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactg 48  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  31921093 cttcggacaaggtttagtcgtttatttgacttagcgaataacaaactg 31921140  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31675329 - 31675260
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacgatggcatatgtgtttg 70  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||| ||| | ||||| || ||||||    
T  31675329 cttcggacaaggtttagtcgtttatttgacttagtgaataacaaactgagtatggtggcagatttgtttg 31675260  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 11196607 - 11196545
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||||||||||||||||| |||||||||| |||||| || || ||||||||||||||||||    
T  11196607 tagaggagtgtaggcaattaattaatggtgtcgttttgcagcataatatttctgacaggtggc 11196545  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 33584231 - 33584296
Alignment:
Q  140 tggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    ||||||||||||||||||| ||||||||||||||| || || ||| |||| ||| |||| ||||||    
T  33584231 tggtagaggagtgtaggcacttacttaatggtgtttttgtgcagtctgatgtttttgacgggtggc 33584296  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 7300934 - 7300874
Alignment:
Q  140 tggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacag 200  Q
    ||||||||||||||||  || | |||||||||||||||||| ||| |||| ||||||||||    
T  7300934 tggtagaggagtgtagataacttcttaatggtgttgttttgcagtctgatgtttctgacag 7300874  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 18844513 - 18844579
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    ||||| ||||||||||||||  | ||||||| | |||||||| ||| ||| ||||||||||||||||    
T  18844513 ttggtggaggagtgtaggcatcttcttaatgattttgttttgtagtctgacatttctgacaggtggc 18844579  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 6245383 - 6245314
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttggga 212  Q
    |||| ||||||||| |||||||||||||||||||||||  |  |||||||||||||| ||||||||||||    
T  6245383 tagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctgacaagtggctttggga 6245314  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 9511038 - 9510969
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggctttggga 212  Q
    ||||||||||||||||||| |||||||||||||||||| ||  | |||||| |||||| |||||||||||    
T  9511038 tagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggctttggga 9510969  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 3939428 - 3939384
Alignment:
Q  186 tgatatttctgacaggtggctttgggagtccaacattgatgatgt 230  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||    
T  3939428 tgatatttctgacaggtggctttgggattccaacaatgatgatgt 3939384  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3939603 - 3939544
Alignment:
Q  1 cttcggacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacgatggca 60  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||||| ||| ||||| |||||    
T  3939603 cttcggacaagatttagtcgtttatttgacttagcgactaacaagctgagtacggtggca 3939544  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 25193349 - 25193283
Alignment:
Q  139 ttggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    ||||| ||||||||||||||  | ||||||| | |||||||| ||| ||| ||||||||||||||||    
T  25193349 ttggtggaggagtgtaggcatcttcttaatgattttgttttgcagtctgacatttctgacaggtggc 25193283  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 43516614 - 43516676
Alignment:
Q  143 tagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||||||||||||| ||| |||||||||| |||||| ||| |||||||||||| |||||||    
T  43516614 tagaggagtgtaggcatttaattaatggtgtcgttttgcagtctgatatttctgagaggtggc 43516676  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 2071799 - 2071734
Alignment:
Q  140 tggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    ||||||||| |||||| ||||||||| | ||| |||||||| | ||||||||||||||||||||||    
T  2071799 tggtagaggggtgtagacaattacttgacggttttgttttgcattatgatatttctgacaggtggc 2071734  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 8753269 - 8753334
Alignment:
Q  140 tggtagaggagtgtaggcaattacttaatggtgttgttttgaagtatgatatttctgacaggtggc 205  Q
    |||||| |||||||||||  |||||| | ||| |||||||| | | ||||||||||||||||||||    
T  8753269 tggtagtggagtgtaggctcttacttgacggttttgttttgcattctgatatttctgacaggtggc 8753334  T

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