View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4862_low_9 (Length: 236)

Name: NF4862_low_9
Description: NF4862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4862_low_9
NF4862_low_9
[»] chr1 (2 HSPs)
chr1 (134-220)||(7452737-7452823)
chr1 (1-82)||(7452604-7452685)
[»] chr3 (1 HSPs)
chr3 (159-216)||(52826916-52826973)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 7452737 - 7452823
Alignment:
Q  134 gactagttacatgatataatttagggtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7452737 gactagttacatgatataatttagggtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtga 7452823  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7452604 - 7452685
Alignment:
Q  1 cacacacacaatgtcaattcaacatgcttgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7452604 cacacacacaatgtcaattcaacatgcttgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc 7452685  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 52826916 - 52826973
Alignment:
Q  159 gtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccaca 216  Q
    |||| |||||||||||||| ||||||||||  || |||||| |||| |||||||||||    
T  52826916 gtcggcgacaatgagctttacacatatggtgacaatcatagtaacatggtccaccaca 52826973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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