View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4863-Insertion-1 (Length: 1060)
Name: NF4863-Insertion-1
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 936; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 936; E-Value: 0
Query Start/End: Original strand, 7 - 1031
Target Start/End: Original strand, 36646870 - 36647892
Alignment:
| Q |
7 |
agaaccatgtgaaccaacttaaaaactcaatccatttggtaataatcatcaacagattcaactgggaaatgaaaaggcactcattgtcaacttgagtgag |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36646870 |
agaaccatgtgaaccaacttaaaaactcaatccatttggtaataatcatcaacagattcaactgggaaatgaaaaggcacttattgtcaacttgagtgag |
36646969 |
T |
|
| Q |
107 |
tgaatgaatgcttaaggtagctatgttaccctcaccacttgattcttcaacttcatatctgagcacaagcaccattgtttcactttgtgtattcttcgca |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36646970 |
tgaatgaatgcttaaggtagctatgttaccctcaccacttgattcttcaacttcatatctgagcacaagcaccattgtttcactttgtgtattcttcgca |
36647069 |
T |
|
| Q |
207 |
ctcctctgcgcttgcatcatcgttggccaccttctcgaagaatatcgatgggccagtgaatccattattgccctacttcttgtacacactcaacatattc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36647070 |
ctcctctgcgcttgcatcatcgttggccaccttctcgaagaatatcgatgggccagtgaatccattattgccctacttcttgtacacactcaacatattc |
36647169 |
T |
|
| Q |
307 |
ttcatcttctctccacttaaaattgtgtagctttctaattctatctcatgtttttcttggatttgttaaatgagtgtagggtttgtgctctggagtggtg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36647170 |
ttcatcttctctccacttaaaattgtgtagctttctaattctatctcatggttttcttggatttgttaaatgagtgtagggtttgtgctctggagtggtg |
36647269 |
T |
|
| Q |
407 |
gtattgttggtgaccaagttccgtagtacagagattctaatattcaacgaagacttgttctttctttacttgcttccaccaatcattttcaatgccgggt |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36647270 |
gtattgttggtgaccaagttccgtagtacagagattctaatattcaacgaagacttgttctttctttacttgcttccaccaatcattttcaatgccgggt |
36647369 |
T |
|
| Q |
507 |
aactgtgattattatcatccttctctatctctttatttaattcatattttatttcttttgtataataatatccaattccatgtcagtttccaagtcaaga |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36647370 |
aactgtgattattatcatccttctctatctcttcatttaattcatattttatttcttttgtataataatatccaattccatgtcagtttccaagtcaaga |
36647469 |
T |
|
| Q |
607 |
agaaacagttcttcaggaatttcactactatacttctgtttggagtccttgggacagttatttctttctgtgtcatatctgttggtaagataattaccta |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
36647470 |
agaaacagttcttcaggaatttcactactatacttctgtttggagtccttgggacagttatttctttctgtgtcatatctgttggtaagataattatcta |
36647569 |
T |
|
| Q |
707 |
ccaatcctcttgagtttcaaattgtttcaatatcattccgaaccttatgccaaaaggaaaaagctgatgataaacaattgctagaataaatactaaatac |
806 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36647570 |
ccaatcctcttgagtttcaaattgtttcaatatcattccaaaccttatgccaaaaggaaaaagctgatgataaacaattgctagaataaatactaaatac |
36647669 |
T |
|
| Q |
807 |
agttatttacgcaacttctttaggtgcctttttggctcttcaata-gattggcataactaacttgagcataaaagatcacctaggtggagtcagtcttca |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
36647670 |
agttatttacgcaacttctttaggtgccttttt-gctcttcaataggattggcataactaacttgagcataaaagatcacctaggt-gagacagtcttca |
36647767 |
T |
|
| Q |
906 |
tttaaaaagaaatttatgtcaaactatctctttcgatttaatcattgtg-tcccctattctgattattcgtggcacattaacatgtgaagccatt-gggc |
1003 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
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|
| T |
36647768 |
tttaaaaagaaatttatgtcgaactatctctttcgatttaatcattgtgttcccctattctgattattcgt-gcacatt-acatgtgaagccattggggc |
36647865 |
T |
|
| Q |
1004 |
tattcttgtcagcaactgactcagtttg |
1031 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
36647866 |
ta-tcttgtcagcaactgactcagtttg |
36647892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 130 - 744
Target Start/End: Original strand, 36652081 - 36652711
Alignment:
| Q |
130 |
tgttaccctcaccacttgattcttcaacttcatatctgagca---------caagcaccattgtttcactttgtgtattcttcgcactcctctgcgcttg |
220 |
Q |
| |
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||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||| | || |||||||||||||||||||| |||||||| |
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| T |
36652081 |
tgttaccctcaccacttcatttttcaacttcatttctgagcagcgcaaccgcaagcaccattgttgcgctctgtgtattcttcgcactcctttgcgcttg |
36652180 |
T |
|
| Q |
221 |
catcatcgttggccaccttctcgaagaatatcgatgggccagtgaatccattattgccctacttcttgtac------acactcaacatattcttcatctt |
314 |
Q |
| |
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||||||| ||||||| ||||| ||||| ||| ||||||| ||| || || | |||||| |||| ||| | ||| ||| ||||||| | | |
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| T |
36652181 |
catcatcattggccatcttctggaagatagtcgttgggccaatgagtctatcactgccctctttctggtattaaccaagacttaactcattcttcttatg |
36652280 |
T |
|
| Q |
315 |
ctctccacttaaaattgtgtagctttctaattcta----tctcatgtttttcttggatttgttaaatgagtgtagggtttgtgctctggagtggtggtat |
410 |
Q |
| |
|
|||| |||||| |||| ||| ||||||| || | | |||| |||||||||| || |||||| || ||||||||||||| ||||| | ||||| |
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| T |
36652281 |
ctcttcacttacaattatgtgtctttctatctcaaattgtttcatatttttcttggcttggttaaacgaatgtagggtttgtgttctggtcttgtggtgc |
36652380 |
T |
|
| Q |
411 |
tgttggtgaccaagttccgtagtacagagattctaatattcaacgaagacttgttctttctttacttgcttccaccaatcattttcaatgccgggtaact |
510 |
Q |
| |
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|| |||||||||| |||| ||| || |||||| | ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
36652381 |
tgctggtgaccaatttccaaagtcacgatattctagtgttcaatgaagacttgttcttcctttacttgcttccaccaatcatcttcaatgccgggtaagt |
36652480 |
T |
|
| Q |
511 |
gtgattattatcatccttctctatctctttatttaattcatattttatttcttttgtataataatatccaa-ttccatgtcagtttccaagtcaagaaga |
609 |
Q |
| |
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|| ||| ||||| || ||||| |||| ||||| ||||| |||| | ||||||||||||| || || || |||||||||||||||||||||||||||| |
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|
| T |
36652481 |
atg-tta--atcattttt-tctatatcttaatttacttcattttttttctcttttgtataatcatttcaaaattccatgtcagtttccaagtcaagaaga |
36652576 |
T |
|
| Q |
610 |
aacagttcttcaggaatttcactactatacttctgtttggagtccttgggacagttatttctttctgtgtcatatctgttggtaagataattacctacca |
709 |
Q |
| |
|
||| |||||| |||||||||| | ||| |||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||| || ||| || || |
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|
| T |
36652577 |
aacggttctttaggaatttcaatcatattcttctgtttggagttcttgggacagttatttcattctgtctcatatctcttggtaatatcattgtcttgca |
36652676 |
T |
|
| Q |
710 |
atcctcttgagtttcaaattgtttcaatatcattc |
744 |
Q |
| |
|
| ||| | ||||||||||||||| |||||||||| |
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|
| T |
36652677 |
accctttcaagtttcaaattgttttaatatcattc |
36652711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 501
Target Start/End: Original strand, 10269909 - 10269940
Alignment:
| Q |
470 |
ctttacttgcttccaccaatcattttcaatgc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
10269909 |
ctttacttgcttccaccaatcattttcaatgc |
10269940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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